LITERATURE ROOM
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and presentations with Evosep One
Here you can find the latest publications from our users and collaboration partners and also discover older publications. Use the search function to explore our Literature Room or get inspiration from the tags and categories.
| Title | Material | Year | Authors | Organization | Evosep method | MS instrumentation | Learn More | hf:tax:evosep_method | hf:tax:ms_vendor |
|---|---|---|---|---|---|---|---|---|---|
| Very early life microbiome and metabolome correlates with primary vaccination variability in children | Journal article | 2023 | Thomas P. Wyche, John Kang, Hendrik Wesseling, Begüm D. Topçuoğlu, Thomas Cairns, Theodore R. Sana, Robin M. Kaufhold, Julia M. Maritz, Christopher H. Woelk, Gokul Swaminathan, James E. Norton Jr., Michael E. Pichichero | Exploratory Science Center, Merck & Co., Inc., Cambridge, Massachusetts, USA | Whisper 40 SPD | Thermo Q Exactive HF-X | whisper-40spd | thermo-q-exactive-hf-x | |
| Emergence of the Dickeya genus involved duplication of the OmpF porin and the adaptation of the EnvZ-OmpR signaling network | Journal article | 2023 | Clémence Cochard, Marine Caby, Peggy Gruau, Edwige Madec, Michael Marceau, Iulia Macavei, Jérôme Lemoine, Chrystelle Le Danvic, Franck Bouchart, Brigitte Delrue, Sébastien Bontemps-Gallo, Jean-Marie Lacroix | Univ. Lille, CNRS, UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, France | 60 SPD | SCIEX ZenoTOF 7600 | 60-spd | sciex-zenotof-7600 | |
| Red Blood Cells from Individuals with Lesch–Nyhan Syndrome: Multi-Omics Insights into a Novel S162N Mutation Causing Hypoxanthine-Guanine Phosphoribosyltransferase Deficiency | Journal article | 2023 | Julie A. Reisz, Monika Dzieciatkowska, Daniel Stephenson, Fabia Gamboni, D. Holmes Morton, Angelo D’Alessandro | Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA | timsTOF Pro | timstof-pro | |||
| Deep and fast label-free Dynamic Organellar Mapping | Journal article | 2023 | Julia P. Schessner, Vincent Albrecht, Alexandra K. Davies, Pavel Sinitcyn, Georg H. H. Borner | Department of Proteomics and Signal Transduction, Systems Biology of Membrane Trafficking Research Group, Max-Planck Institute of Biochemistry, Martinsried, Germany | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Proteomic Analysis of Dysfunctional Liver Sinusoidal Endothelial Cells Reveals Substantial Differences in Most Common Experimental Models of Chronic Liver Diseases | Journal article | 2023 | Mar Gil, Mikel Azkargorta, Carla Fuster, María Martínez-Gómez, Imma Raurell, Aurora Barberá, Juan Manuel Pericàs, Diana Hide, Felix Elortza, Joan Genescà, María Martell | Liver Diseases, Vall d’Hebron Institut de Recerca (VHIR), Liver Unit, Hospital Universitari Vall d’Hebron (HUVH), Vall d’Hebron Barcelona Hospital Campus, Universitat Autònoma de Barcelona (UAB) | 30 SPD | timsTOF Pro | 30-spd | timstof-pro | |
| An unconventional TOG domain is required for CLASP localization | Journal article | 2023 | Nelly Gareil, Alison Gervais, Nicolas Macaisne, Guillaume Chevreux, Julie C. Canman, Jessica Andreani, Julien Dumont | Université Paris Cité, CNRS, Institut Jacques Monod | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Trans-Omics analysis of post injury thrombo-inflammation identifies endotypes and trajectories in trauma patients | Publication | 2023 | Christopher B. Erickson, Ian S. Lacroix, Margot Debot, Monika Dzieciatkowska, Terry R. Schaid, Morgan W. Hallas, Otto N. Thielen, Alexis L. Cralley, Anirban Banerjee, Ernest E Moore, Christopher C. Silliman, Angelo D’Alessandro, Kirk C. Hansen | Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus; Aurora, CO | timsTOF Pro | timstof-pro | |||
| Cell-type-specific regulation of APOE and CLU levels in human neurons by the Alzheimer’s disease risk gene SORL1 | Journal article | 2023 | Hyo Lee, Aimee J. Aylward, Richard V. Pearse II, Vilas Menon, Jessica E. Young, Tracy L. Young-Pearse | Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA | 60 SPD | Thermo Orbitrap Eclipse Tribid | 60-spd | thermo-orbitrap-eclipse-tribid | |
| Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel | Journal article | 2023 | Lisa Schweizer, Thierry M Nordmann, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Mitchell P Levesque, Fabian J Theis, Martin Steger, Matthias Mann | Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany | Whisper 40 SPD | timsTOF Pro | whisper-40spd | timstof-pro | |
| Quantitative multiorgan proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation | Journal article | 2023 | Lisa Schweizer, Tina Schaller, Maximilian Zwiebel, Özge Karayel, Johannes Bruno Müller-Reif,Wen-Feng Zeng, Sebastian Dintner, Thierry M Nordmann, Klaus Hirschbühl, Bruno Märkl, Rainer Claus, Matthias Mann | Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany | 15 SPD | Thermo Orbitrap Exploris 480 | 15-spd | thermo-orbitrap-exploris-480 | |
| Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae | Journal article | 2023 | Ulises H. Guzman, Henriette Aksnes, Rasmus Ree, Nicolai Krogh, Magnus E. Jakobsson, Lars J. Jensen, Thomas Arnesen, Jesper V. Olsen | Novo Nordisk Foundation Center for Protein Research, Proteomics Program, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Enhanced CellWall and Cell Membrane Activity Promotes Heat | Journal article | 2023 | Li Wang, Aike Li, Jun Fang, Yongwei Wang, Lixian Chen, Lin Qiao, Weiwei Wang | Academy of National Food and Strategic Reserves Administration, College of Bioscience and Biotechnology, Hunan Agricultural University, China | Thermo Orbitrap Exploris 480 | thermo-orbitrap-exploris-480 | |||
| Mechanisms of nuclear pore complex disassembly by the mitotic Polo-like kinase 1 (PLK-1) in C. elegans embryos | Journal article | 2023 | Sylvia Nkombo Nkoula, Griselda Velez-Aguilera, Batool Ossareh-Nazari, Lucie Van Hove, Cristina Ayuso, Guillaume Chevreux, Laura Thomas, Géraldine Seydoux, Peter Askjaer, Lionel Pintard | Université Paris Cité, CNRS, Institut Jacques Monod | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Effects of multiple stressors on pancreatic human islets proteome reveal new insights into the pathways involved | Journal article | 2023 | Mehari Muuz Weldemariam, Putty-Reddy Sudhir, Jongmin Woo, Qibin Zhang | Center for Translational Biomedical Research, University of North Carolina at Greensboro, North Carolina Research Campus, Kannapolis, North Carolina, USA | 15 SPD | Thermo Orbitrap Exploris 240 | 15-spd | thermo-orbitrap-exploris-240 | |
| N-glycosylation acts as a switch for FGFR1 trafficking between the plasma membrane and nuclear envelope | Journal article | 2023 | Paulina Gregorczyk, Natalia Porebska, Dominika Żukowska, Aleksandra Chorążewska, Aleksandra Gędaj, Agata Malinowska, Jacek Otlewski, Małgorzata Zakrzewska, Łukasz Opaliński | Faculty of Biotechnology, Department of Protein Engineering, University of Wroclaw | 15 SPD | Thermo Orbitrap Exploris 480 | 15-spd | thermo-orbitrap-exploris-480 | |
| Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol | Journal article | 2023 | Yuchuan Li, Manoj Amrutkar, Anette Vefferstad Finstadsveen, Knut Tomas Dalen, Caroline S Verbeke, Ivan P. Gladhaug | University of Oslo, Oslo University Hospital Rikshospitalet | 30 SPD | Bruker timsTOF | 30-spd | bruker-timstof | |
| Cofilin-Driven Nuclear Deformation Drives Dendritic Cell Migration through the Extracellular Matrix | Publication | 2023 | Shweta Mahajan, Deepti Dabral, Britt Coenen, Frans Bianchi, Niek van Hilten, Herre Jelger Risselada, Wouter H. Roos, Jesper Olsen, Laia Querol Cano, Geert van den Bogaart | Department of Molecular Immunology, Groningen Biomolecular Sciences and Biotechnology | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Clinical proteomics reveals vulnerabilities in non-invasive breast ductal carcinoma and drives personalized treatment strategies | Publication | 2023 | Georgia Mitsa, Livia Florianova, Josiane Lafleur, Adriana Aguilar-Mahecha, Rene P. Zahedi, Sonia V del Rincon, Mark Basik, Christoph H Borchers, Gerald Batist | Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC | Extended method | Thermo Q-Exactive Plus Hybrid Quadrupole-Orbitrap | extended-method | thermo-q-exactive-plus-hybrid-quadrupole-orbitrap | |
| A seven-transmembrane methyltransferase catalysing N-terminal histidine methylation of lytic polysaccharide monooxygenases | Journal article | 2023 | Tanveer S. Batth, Jonas L. Simonsen, Cristina Hernández-Rollán, Søren Brander, Jens Preben Morth, Katja S. Johansen, Morten H. H. Nørholm, Jakob B. Hoof & Jesper V. Olsen | The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Protocol for high-throughput semi-automated label-free- or TMT-based phosphoproteome profiling | Publication | 2023 | Claire Koenig, Ana Martinez-Val, Previn Naicker, Stoyan Stoychev, Justin Jordaan, Jesper V. Olsen | Evosep Biosystems, Odense, Denmark, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ReSyn Biosciences, Pretoria, South Africa | |||||
| One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes | Publication | 2023 | Zilu Ye, Pierre Sabtier, Javier Martin-Gonzalez, Akihiro Eguchi, Dorte Bekker-Jensen, Nicolai Bache, Jesper V. Olsen | Evosep Biosystems, Denmark, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, Core Facility for Transgenic Mice, Department of Experimental Medicine, University of Copenhagen, Denmark | |||||
| A complete and automated end-to-end sample preparation strategy for high-throughput and standardized proteomics with high sensitivity | Poster | 2023 | Magnus Huusfeldt, Joel Vej-Nielsen, Dorte B. Bekker-Jensen, Lasse Falkenby, Jesper V. Olsen, Nicolai Bache | Evosep Biosystems, Denmark, University of Copenhagen | 100 SPD, 30 SPD, Whisper 40 SPD | 100-spd 30-spd whisper-40spd | |||
| Pushing the boundaries for robust and high-throughput single cell analysis with Whisper Flow technology powered by dia-PASEF | Poster | 2023 | Dorte B. Bekker-Jensen, Christoph Krisp, David Hartlmayr, Anjali Seth, Ole B. Hørning, Magnus Huusfeldt, Andreia Almeida, Markus Lubeck, Gary Kruppa, Jarrod Sandow & Nicolai Bache | Evosep Biosystems, Bruker Daltonics GmBH & Co. KG, Cellenion, IonOpticks, Bruker s.r.o | Whisper 40 SPD, Whisper 80 SPD | Bruker timsTOF SCP | whisper-40spd whisper-80-spd | bruker-timstof-scp | |
| Rapid and robust PTM peptide mapping for biologics with the Evosep One and the ZenoTOF 7600 | Poster | 2023 | Moritz Heusel, Stephen Lock, Nick Morrice, Sibylle Heidelberger, Jakob Bunkenborg, Michael Barrett Andersen, Nicolai Bache | Evosep Biosystems, SCIEX Macclesfield | 100 SPD, 200 SPD, 300 SPD, 60 SPD | SCIEX ZenoTOF 7600 | 100-spd 200-spd 300-spd 60-spd | sciex-zenotof-7600 | |
| A genetic code change in progress: tRNA-Leu(CAG) is conserved in most Saccharomycopsis yeast 3 species but is non-essential and does not compete with tRNA-Ser(CAG) in translation | Publication | 2023 | Eoin Ó Cinnéide, Caitriona Scaife, Eugene Dillon, Kenneth H. Wolfe | University College Dublin | 15 SPD | Bruker timsTOF Pro | 15-spd | bruker-timstof-pro | |
| Distribution and Chemistry of Phoenixin-14, a Newly Discovered Sensory Transmission Molecule in Porcine Afferent Neurons | Journal article | 2023 | Urszula Mazur, Ewa Lepiarczyk, Paweł Janikiewicz, Elżbieta Łopieńska-Biernat, Mariusz Krzysztof Majewski and Agnieszka Bossowska | University of Warmia and Mazury in Olsztyn | 15 SPD | Thermo Orbitrap Exploris 480 | 15-spd | thermo-orbitrap-exploris-480 | |
| Altered intratumoral immune composition after Nivolumab treatment in patients with recurrent glioblastoma | Journal article | 2023 | Sine Hadrup, Signe Skadborg, Simone Maarup, Arianna Draghi, Annie Borch, Sille Hendriksen, Filip Mundt, Matthias Mann, Jane Skjoeth-Rasmussen, Christina Westmose Yde, Hans Poulsen, Benedikte Hasselbach, Inge Marie Svane | Technical University of Denmark, Rigshospitalet, Copenhagen University Hospital, University of Copenhagen, Rigshospitalet | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Multiomics analysis of naturally efficacious lipid nanoparticle coronas reveals high-density lipoprotein is necessary for their function | Journal article | 2023 | Kai Liu, Ralf Nilsson, Elisa Lázaro-Ibáñez, Hanna Duàn, Tasso Miliotis, Marie Strimfors, Michael Lerche, Ana Rita Salgado Ribeiro, Johan Ulander, Daniel Lindén, Anna Salvati & Alan Sabirsh | AstraZeneca, University of Gothenburg | 30 SPD | Thermo Q Exactive HF | 30-spd | thermo-q-exactive-hf | |
| Using In Vivo Intact Structure for System-wide Quantitative Analysis of Changes in Proteins | Publication | 2023 | John Yates III, Ahrum Son, Hyunsoo Kim, Jolene Diedrich, Tom Bamberger, Daniel McClatchy | Scripps Research Institute, Chungnam National University | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| AZGP1 as a potential biomarker of IgA vasculitis with nephritis in a children‑based urinary proteomics study by diaPASEF | Publication | 2023 | Zhi‑Qing Zhu, Tian Zhang, Shuo Chang, Zhen‑Hua Ren and Qin Zhang | First Affiliated Hospital of Anhui Medical University, Anhui Medical University | Bruker timsTOF | bruker-timstof | |||
| Cross-Linking Mass Spectrometry on P-Glycoprotein | Journal article | 2023 | Gabriella Gellen, Eva Klement, Kipchumba Biwott, Gitta Schlosser,Gergő Kalló, Éva Csősz, Katalin F. Medzihradszky and Zsolt Bacso | ELTE Eötvös Loránd University, University of Debrecen, HCEMM, BRC | Extended method | Thermo Orbitrap Fusion Lumos | extended-method | thermo-orbitrap-fusion-lumos | |
| Profiling of the Klebsiella pneumoniae Phosphoproteome under Iron-Limited and Iron-Replete Conditions | Journal article | 2023 | Chelsea Reitzel, Arjun Sukumaran, Benjamin Muselius, Siobhan O’Connor, Jennifer Geddes-McAlister | University of Guelph | Thermo Orbitrap Exploris 240 | thermo-orbitrap-exploris-240 | |||
| Topological defects at smectic interfaces as a potential tool for the biosensing of living microorganisms | Publication | 2023 | Vajra S. Badha, Tagbo H.R. Niepa, and Mohamed Amine Gharbia | University of Massachusetts Boston, Carnegie Mellon University, | Bruker timsTOF HT | bruker-timstof-ht | |||
| TIMSTOF Compass 4.0 Methods – LCMS and MALDI – OrsburnLab 2023 v1 | Publication | 2023 | Benjamin Orsburn | The Johns Hopkins University School of Medicine | Whisper 40 SPD | Bruker timsTOF | whisper-40spd | bruker-timstof | |
| ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast | Publication | 2023 | Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska & Roza Kucharczyk | Polish Academy of Sciences | Thermo Orbitrap Exploris 480 | thermo-orbitrap-exploris-480 | |||
| DIS3 ribonuclease prevents the cytoplasmic accumulation of lncRNAs carrying non-canonical ORFs, which represent a source of cancer immunopeptides | Journal article | 2023 | Dominika Foretek, Marc Gabriel, Isabelle Hatin, Julien Jarroux, Marina Pinskaya, Elise Pepermans, Kurt Boonen, Rachel Topno, Vera Slaninova, Marina Serna, Oscar Llorca, Geert Baggerman, Edouard Bertrand, Steven West, Olivier Namy | Institut Curie, Institute for Integrative Biology of the Cell, Weill Cornell Medicine, Institut Curie-CNRS, University of Antwerp, Institut Genetique Humaine, Spanish National Cancer Research Center (CNIO), Institut de Génétique Humaine, University of | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| The protein and miRNA profile of plasma extracellular vesicles (EVs) can distinguish feline mammary adenocarcinoma patients from healthy feline controls | Journal article | 2023 | Jane Howard, John Browne, Stephanie Bollard, Susan Peters, Ciara Sweeney, Kieran Wynne, Shirley Potter, Amanda McCann & Pamela Kelly | University College Dublin, Mater Misericordiae University Hospital | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Fast proteomics with dia-PASEF and analytical flow-rate chromatography | Publication | 2023 | Lukasz Szyrwiel, Christoph Gille, Michael Mülleder, Vadim Demichev, Markus Ralser | Universitätsmedizin Berlin, University of Oxford, Max Planck Institute for Molecular Genetics | 400 SPD | Bruker timsTOF Pro | 400-spd | bruker-timstof-pro | |
| Co-administration of angiotensin II and simvastatin triggers kidney injury upon heme oxygenase-1 deficiency | Publication | 2023 | Aleksandra Kopacz, Damian Kloska, Dominik Cysewski, Izabela Kraszewska, Karolina Przepiorska, Małgorzata Lenartowicz, Agnieszka Łoboda, Anna Grochot-Przęczek, Witold Nowak, Alicja Jozkowicz, and Aleksandra Piechota-Polanczyk | Jagiellonian University, Polish Academy of Sciences, and Białystok, | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Vacuum Insulated Probe Heated Electrospray Ionization Source Enhances Microflow Rate Chromatography Signals in the Bruker timsTOF Mass Spectrometer | Publication | 2023 | Mukul K. Midha, Charu Kapil, Michal Maes, David H. Baxter, Seamus R. Morrone, Timothy J. Prokop, and Robert L. Moritz | Institute for Systems Biology | 100 SPD, 15 SPD, 200 SPD, 30 SPD, 60 SPD | Bruker timsTOF | 100-spd 15-spd 200-spd 30-spd 60-spd | bruker-timstof | |
| Structural insights into Siglec-15 reveal glycosylation dependency for its interaction with T cells through integrin CD11b | Journal article | 2023 | Maria Pia Lenza, Leire Egia-Mendikute, Asier Antoñana-Vildosola, Cátia O. Soares, Helena Coelho, Francisco Corzana, Alexandre Bosch, Prodhi Manisha, Jon Imanol Quintana, Iker Oyenarte, Luca Unione, María Jesús Moure, Mikel Azkargorta, Unai Atxabal, Klaudi | Center for Cooperative Research in Biosciences, NOVA School of Science and Technology, University of La Rioja, | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Evaluation of a ‘plug and play’ nanoflow liquid chromatography system for MS-based proteomic characterization of clinical FFPE specimens | Journal article | 2023 | Georgia Mitsa, Vincent R Richard, Yasamin Majedi, Josiane Lafleur, Adriana Aguilar-Mahecha, Mark Basik, Christoph H Borchers | McGill University, Jewish General Hospital | 15 SPD | Thermo Q Exactive | 15-spd | thermo-q-exactive | |
| More proteome coverage in a single experiment with the Extended method | Application note | 2023 | Evosep Biosystems | Extended method | extended-method | ||||
| A specialized separation method for hydrophobic targets with the High Organic method | Application note | 2023 | Evosep Biosystems | High Organic Method | high-organic-method | ||||
| A specialized method using Whisper Flow technology with a throughput of 20 samples per day | Application note | 2023 | Evosep Biosystems | Whisper 20 SPD | whisper-20spd | ||||
| A specialized method using Whisper Flow technology with a throughput of 80 samples per day | Application note | 2023 | Evosep Biosystems | Whisper 80 SPD | whisper-80-spd | ||||
| A standardized separation method with a throughput of 500 samples per day | Application note | 2023 | Evosep Biosystems | 500 SPD | 500-spd | ||||
| A specialized method using Whisper Flow technology with a throughput of 40 samples per day | Application note | 2023 | Whisper 40 SPD | whisper-40spd | |||||
| Evotip Pure simplifies workflows with excellent reproducibility, storage and recovery | Application note | 2023 | Evosep Biosystems | 100 SPD, 60 SPD, Whisper 40 SPD | 100-spd 60-spd whisper-40spd | ||||
| Towards a Standardized Omics Platform with the 60 samples per day method | Application note | 2023 | Evosep | Evosep | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Towards a Standardized Omics Platform with the 100 samples per day method | Application note | 2023 | Evosep | Evosep | 100 SPD | Thermo Orbitrap Exploris 480 | 100-spd | thermo-orbitrap-exploris-480 | |
| Towards a Standardized Omics Platform with the 200 samples per day method | Application note | 2023 | Evosep | Evosep | 200 SPD | Thermo Orbitrap Exploris 480 | 200-spd | thermo-orbitrap-exploris-480 | |
| A standardized separation method with a throughput of 300 samples per day | Application note | 2023 | Evosep | Evosep | 300 SPD | Thermo Orbitrap Exploris 480 | 300-spd | thermo-orbitrap-exploris-480 | |
| Evosep One solves the proteomics dilemma – covering high throughput analysis and proteome depth | Application note | 2023 | Evosep Biosystems | 100 SPD, 200 SPD, 30 SPD, 300 SPD, 60 SPD | 100-spd 200-spd 30-spd 300-spd 60-spd | ||||
| End-to-end, fully automated digestion protocol and Evotip Pure workflow on the Opentrons OT-2 | Application note | 2023 | Evosep Biosystems | Evosep Biosystems | 100 SPD, Whisper 40 SPD | timsTOF Pro 2 | 100-spd whisper-40spd | timstof-pro-2 | |
| Fully automated, rapid, robust sample loading on Evotip Pure with the Agilent AssayMAP Bravo | Application note | 2023 | Evosep Biosystems | Evosep Biosystems | 100 SPD, Whisper 40 SPD | SCIEX ZenoTOF 7600, timsTOF Pro 2 | 100-spd whisper-40spd | sciex-zenotof-7600 timstof-pro-2 | |
| Epigenetic inactivation of the 5-methylcytosine RNA methyltransferase NSUN7 is associated with clinical outcome and therapeutic vulnerability in liver cancer | Publication | 2023 | Vanessa Ortiz-Barahona, Marta Soler, Veronica Davalos, Carlos A. García-Prieto, Maxime Janin, Fernando Setien, Irene Fernández-Rebollo, Joan J. Bech-Serra, Carolina De La Torre, Sonia Guil, Alberto Villanueva, Pei-Hong Zhang, Li Yang, Marco Guarnacci, Ulr | Josep Carreras Leukaemia Research Institute. Barcelona Supercomputing Center (BSC), Germans Trias i Pujol Health Science Research Institute, Bellvitge Biomedical Research Institute, University of Chinese Academy of Sciences, l, Fudan University and Shangh | 15 SPD | Thermo Orbitrap Eclipse Tribid | 15-spd | thermo-orbitrap-eclipse-tribid | |
| Comprehensive proteomic characterization and functional annotation of Siberian sturgeon seminal plasma proteins | Journal article | 2023 | Natalia Kodzik, Andrzej Ciereszko, Mirosław Szczepkowski, Halina Karol, Sylwia Judycka, Agata Malinowska, Bianka Swiderska and Mariola A. Dietrich | Polish Academy of Sciences and Inland Fisheries Institute in Olsztyn | 15 SPD | Thermo Orbitrap Exploris 480 | 15-spd | thermo-orbitrap-exploris-480 | |
| Brain molecular mechanisms in Rasmussen encephalitis | Publication | 2023 | Dominique F. Leitner, Ziyan Lin, Zacharia Sawaged, Evgeny Kanshin, Daniel Friedman, Sasha Devore, Beatrix Ueberheide, Julia W. Chang, Gary W. Mathern, Jasper J. Anink, Eleonora Aronica, Thomas Wisniewski and Orrin Devinsky | NYU Grossman School of Medicine, University of California, University of Amsterdam and Epilepsy Institutes of the Netherlands Foundation | 15 SPD | Thermo Q Exactive HF-X | 15-spd | thermo-q-exactive-hf-x | |
| Resolving the Temporal Splenic Proteome during Fungal Infection for Discovery of Putative Dual Perspective Biomarker Signatures | Journal article | 2023 | Benjamin Muselius, Florence Roux-Dalvai, Arnaud Droit and Jennifer Geddes-McAlister | University of Guelph, CHU de Québec - Université Laval Research Center and University of Guelph | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| In situ digestion of alcohol-fixed cells for quantitative proteomics | Publication | 2022 | Atsushi Hatano, Tomoyo Takami and Masaki Matsumoto | Graduate School of Medical and Dental Sciences and Niigata University | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Astaxanthin supplementation counters exercise-induced decreases in immune-related plasma proteins | Journal article | 2023 | David C. Nieman, Jongmin Woo, Camila A. Sakaguchi, Ashraf M. Omar, Yang Tang, Kierstin Davis, Alessandra Pecorelli, Giuseppe Valacchi and Qibin Zhang | Appalachian State University, University of North Carolina at Greensboro, North Carolina State University and University of Ferrara | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Proteomic Analysis of Mesenchymal Stem Cells and Monocyte Co-Cultures Exposed to a Bioactive Silica-Based Sol–Gel Coating | Journal article | 2023 | Andreia Cerqueira, Francisco Romero-Gavilán, Heike Helmholz, Mikel Azkargorta, Félix Elortza, Mariló Gurruchaga, Isabel Goñi, Regine Willumeit-Römer and Julio Suay | Universitat Jaume, Helmholtz-Zentrum Hereon Institute of Metallic Biomaterials, CIC bioGUNE and University of the Basque Country | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| In depth profiling of the cancer proteome from the flowthrough of standard RNA-preparation kits for precision oncology | Journal article | 2023 | Filip Mundt, Annelaura Bach Nielsen, Josephine Kerzel Duel, Christina Westmose Yde, Martina Amnitzbøll Eriksen, Ulrik Lassen, Finn Cilius Nielsen, Kristoffer Rohrberg and Matthias Mann | University of Copenhagen, Novo Nordisk, Copenhagen University Hospital, Rigshospitalet and Max Planck Institute of Biochemistry | 30 SPD | Bruker timsTOF SCP | 30-spd | bruker-timstof-scp | |
| Simultaneous targeting of PD-1 and IL-2Rbg with radiation therapy inhibits pancreatic cancer growth and metastasis | Publication | 2023 | Miles Piper, Maureen Hoen, Laurel B. Darragh, Michael W. Knitz, Diemmy Nguyen, Jacob Gadwa, Greta Durini, Idil Karakoc, Abby Grier, Brooke Neupert, Benjamin Van Court, Khalid N.M. Abdelazeem, Justin Yu, Nicholas A. Olimpo, Sophia Corbo, Richard Blake Ross | University of Colorado and Roche Innovation Center Zurich | Whisper 20 SPD | Bruker timsTOF SCP | whisper-20spd | bruker-timstof-scp | |
| Reduced binding of apoE4 to complement factor H promotes amyloid-β oligomerization and neuroinflammation | Publication | 2023 | Larisa Chernyaeva, Giorgio Ratti, Laura Teirilä, Satoshi Fudo, Uni Rankka, Anssi Pelkonen, Paula Korhonen, Katarzyna Leskinen, Salla Keskitalo, Kari Salokas, Christina Gkolfinopoulou, Katrina E Crompton, Matti Javanainen, Lotta Happonen, Markku Varjosalo, | University of Helsinki, University of Eastern Finland, National Center for Scientific Research "Demokritos", Newcastle University, Lund University and Kuopio University Hospital | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Mass spectrometry-based proteomics approaches to interrogate skeletal muscle adaptations to exercise | Publication | 2023 | Daniel T. Cervone, Roger Moreno-Justicia, Júlia Prats Quesada and Atul S. Deshmukh | University of Copenhagen | Bruker, SCIEX, Thermo | bruker sciex thermo | |||
| Matrix Gla Protein drives stemness and tumor initiation in ovarian cancer | Journal article | 2023 | V. Nieddu, V. Melocchi, C. Battistini, G. Franciosa, M. Lupia, C. Stellato, G. Bertalot, J. V. Olsen, N. Colombo, F. Bianchi and U. Cavallaro | European Institute of Oncology IRCSS, Fondazione IRCCS Casa Sollievo della Sofferenza, University of Copenhagen, APSS, University of Trento and University of Milan-Bicocca Centre for Medical Sciences – CISMed, taly University of Milan-Bicocca, ondazione I | 30 SPD | Thermo Q Exactive 480 | 30-spd | thermo-q-exactive-480 | |
| A desert Chlorella sp. that thrives at extreme high-light intensities using a unique photoinhibition protection mechanism | Journal article | 2023 | Guy Levin, Michael Yasmin, Varda Liveanu, Carmit Burstein, Rawad Hanna, Oded Kleifeld, Marc C. Simanowitz, Ayala Meir, Yaakov Tadmor, Joseph Hirschberg, Noam Adir and Gadi Schuster | Technion, Hebrew University of Jerusalem & Newe Ya'ar Research Center | 30 SPD | Thermo Q Exactive HF | 30-spd | thermo-q-exactive-hf | |
| Characteristics of size-exclusion chromatography enriched porcine follicular fluid extracellular vesicles | Journal article | 2023 | Kinga Kaminska, Kasun Godakumara, Bianka Swiderska, Agata Malinowska, Getnet Midekessa, Kamila Sofinska, Jakub Barbasz, Alireza Fazeli and Malgorzata Grzesiak | Jagiellonian University, Estonian University of Life Sciences, University of Tartu, Polish Academy of Sciences, University of Sheffield | Extended method | Thermo Orbitrap Exploris 480 | extended-method | thermo-orbitrap-exploris-480 | |
| A Longitudinal Study of Individual Radiation Responses in Pediatric Patients Treated with Proton and Photon Radiotherapy, and Interventional Cardiology: Rationale and Research Protocol of the HARMONIC Project | Publication | 2023 | Maria Grazia Andreassi, Nadia Haddy, Mats Harms-Ringdahl, Jonica Campolo, Andrea Borghini, François Chevalier, Jochen M. Schwenk, Brice Fresneau, Stephanie Bolle, Manuel Fuentes and Siamak Haghdoost | CNR National Research Council Institute of Clinical Physiology, Université Paris-Saclay, Stockholm University, CEA-CNRS-ENSICAEN-University of Caen Normandy, Advanced Resource Center for HADrontherapy in Europe, SciLifeLab and University of Salamanca-CSIC | 60 SPD | timsTOF Pro 2 | 60-spd | timstof-pro-2 | |
| Flexibility, speed, and throughput for high proteome coverage using Zeno SWATH data-independent acquisition (DIA) coupled with the Evosep One system | Application note | 2023 | Patrick Pribil and Ihor Batruch | Sciex | 100 SPD, 200 SPD, 30 SPD, 300 SPD, 500 SPD, 60 SPD | SCIEX ZenoTOF 7600, timsTOF Pro 2 | 100-spd 200-spd 30-spd 300-spd 500-spd 60-spd | sciex-zenotof-7600 timstof-pro-2 | |
| The GAPDH redox switch safeguards reductive capacity and enables survival of stressed tumour cells | Journal article | 2023 | Deepti Talwar, Colin G. Miller, Justus Grossmann, Lukasz Szyrwiel, Torsten Schwecke, Vadim Demichev, Ana-Matea Mikecin Drazic, Anand Mayakonda, Pavlo Lutsik, Carmen Veith, Michael D. Milsom, Karin Müller-Decker, Michael Mülleder, Markus Ralser & Tobias P | Nature Metabolism | 15 SPD | timsTOF Pro 2 | 15-spd | timstof-pro-2 | |
| Suspension TRAPping Filter (sTRAP) Sample Preparation for Quantitative Proteomics in the Low µg Input Range Using a Plasmid DNA Micro-Spin Column: Analysis of the Hippocampus from the 5xFAD Alzheimer’s Disease Mouse Model | Publication | 2023 | Evangelia Thanou, Frank Koopmans, Débora Pita-Illobre, Remco V. Klaassen,Berna Özer, Ioannis Charalampopoulos, August B. Smit, and Ka Wan Li | Amsterdam Neuroscience, University of Crete, Foundation for Research and Technology Hellas | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Simultaneous targeting of PD-1 and IL-2Rβγ with radiation therapy inhibits pancreatic cancer growth and metastasis | Publication | 2023 | Miles Piper, Maureen Hoen, Laurel B. Darragh, Michael W. Knitz, Diemmy Nguyen, Jacob Gadwa, Greta Durini, Idil Karakoc, Abby Grier, Brooke Neupert, Benjamin Van Court, Khalid N.M. Abdelazeem, Justin Yu, Nicholas A. Olimpo, Sophia Corbo, Richard Blake Ross | University of Colorado, University of Colorado | Whisper 20 SPD | Bruker timsTOF SCP | whisper-20spd | bruker-timstof-scp | |
| Myosin inhibitor reverses hypertrophic cardiomyopathy in pediatric iPSC-cardiomyocytes to mirror variant correction | Publication | 2023 | Caroline Kinnear, Abdelrahman Said, Guoliang Meng, Yimu Zhao, Erika Y Wang, Neha Parmar, Wei Wei, Filio Billia, MD, Craig A Simmons, Milica Radisic, James Ellis, Seema Mital | The Hospital for Sick Children, University of Toronto, University Health Network, Massachusetts Institute of Technology, Ted Rogers Centre for Heart Research | 60 SPD | Thermo Orbitrap Fusion Lumos | 60-spd | thermo-orbitrap-fusion-lumos | |
| Dynamic antagonism between key repressive pathways maintains the placental epigenome | Journal article | 2023 | Raha Weigert, Sara Hetzel, Nina Bailly, Chuck Haggerty, Ibrahim A. Ilik, Philip Yuk Kwong Yung, Carmen Navarro, Adriano Bolondi, Abhishek Sampath Kumar, Chiara Anania, Björn Brändl, David Meierhofer, Darío G. Lupiáñez, Franz-Josef Müller, Tugce Aktas, Sim | Technische Universität Berlin, , Max Planck Institute for Molecular Genetics, Freie Universität Berlin, Karolinska Institutet, Max-Delbrück Center for Molecular Medicine, Universitätsklinikum Schleswig-Holstein Campus Kiel, Yale School of Medicine, Broad | 30 SPD | Bruker timsTOF SCP | 30-spd | bruker-timstof-scp | |
| Blue Native PAGE–Antibody Shift in Conjunction with Mass Spectrometry to Reveal Protein Subcomplexes: Detection of a Cerebellar α1/α6-Subunits Containing γ-Aminobutyric Acid Type A Receptor Subtype | Journal article | 2023 | Miao Chen,Frank Koopmans, Iryna Paliukhovich,Sophie J. F. van der Spek, Jian Dong, August B. Smit, Ka Wan Li | Vrije Universiteit Amsterdam, Boston University | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Foresight in clinical proteomics: current status, ethical considerations, and future perspectives | Publication | 2023 | Filip Mundt, Nicolai J. Wewer Albrechtsen, Sebastian Porsdam Mann, Peter Treit, Medini Ghodgaonkar-Steger, Martina O’Flaherty, Reinout Raijmakers, Juan Antonio Vizcaíno, Albert J.R. Heck, Matthias Mann | University of Copenhagen, University of Oxford, Max Planck Institute of Biochemistry, Utrecht University, European Bioinformatics Institute (EMBL-EBI) | Thermo Orbitrap Exploris 480 | thermo-orbitrap-exploris-480 | |||
| Experimental strategies to improve drug-target identification in mass spectrometry-based thermal stability assays | Journal article | 2023 | Clifford G. Phaneuf, Konstantin Aizikov, Dmitry Grinfeld, Arne Kreutzmann, Daniel Mourad, Oliver Lange, Daniel Dai, Bailin Zhang, Alexei Belenky, Alexander A. Makarov & Alexander R. Ivanov | Northeastern University, Thermo Fisher Scientific, Disease Profiling and Functional Genomics, Tarmeta Biosciences | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Rapid Profiling of Protein Complex Reorganization in Perturbed Systems | Journal article | 2023 | Isabell Bludau, Charlotte Nicod, Claudia Martelli, Peng Xue, Moritz Heusel, Andrea Fossati, Federico Uliana, Fabian Frommelt, Ruedi Aebersold, and Ben C. Collins | ETH Zürich, Max Planck Institute of Biochemistry, Lund University, University of California San Francisco, Queen’s University of Belfast | 60 SPD | SCIEX TripleTOF 6600 MS system | 60-spd | sciex-tripletof-6600-ms-system | |
| Towards a Standardized Omics Platform with the 30 samples per day method | Application note | 2023 | Evosep | Evosep | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| A simple, time- and cost-effective, high-throughput depletion strategy for deep plasma proteomics | Publication | 2023 | Arthur Viode, Patrick van Zalm, Kinga K. Smolen, Benoit Fatou, David Stevenson, Meenakshi Jha, Ofer Levy, Judith Steen and Hanno Steen | Boston Children's Hospital, Harvard Medical School, Maastricht University and Broad Institute of MIT and Harvard | 60 SPD | timsTOF Pro 2 | 60-spd | timstof-pro-2 | |
| A Streamlined High-Throughput Plasma Proteomics Platform for Clinical Proteomics with Improved Proteome Coverage, Reproducibility, and Robustness | Publication | 2023 | Jongmin Woo and Qibin Zhang | University of North Carolina | 60 SPD | Thermo Orbitrap Exploris 240 | 60-spd | thermo-orbitrap-exploris-240 | |
| Cell-type-specific regulation of APOE levels in human neurons by the Alzheimer’s disease risk gene SORL1 | Publication | 2023 | Hyo Lee, Aimee J. Aylward, Richard V. Pearse II, Yi-Chen Hsieh, Zachary M. Augur, Courtney R. Benoit, Vicky Chou, Allison Knupp, Cheryl Pan, Srilakshmi Goberdhan, Duc M. Duong, Nicholas T. Seyfried, David A. Bennett, Hans-Ulrich Klein, Philip L. De Jager, | Brigham and Women’s Hospital and Harvard Medical School, University of Washington, Emory School of Medicine, Rush University Medical Center & Columbia University Irving Medical Center | 60 SPD | Thermo Orbitrap Eclipse Tribid | 60-spd | thermo-orbitrap-eclipse-tribid | |
| INPP5D/SHIP1 regulates inflammasome activation in human microglia | Publication | 2023 | Vicky Chou, Seeley B. Fancher, Richard V. Pearse II, Hyo Lee, Matti Lam, Nicholas T. Seyfried, David A. Bennett, Phillip L. De Jager, Vilas Menon & Tracy L. Young-Pearse | Brigham and Women’s Hospital and Harvard Medical School, Columbia University Medical Center, Emory School of Medicine & Rush University Medical Center | 60 SPD | Thermo Orbitrap Eclipse Tribid | 60-spd | thermo-orbitrap-eclipse-tribid | |
| DIP-MS: A novel ultra-deep interaction proteomics for the deconvolution of protein complexes | Publication | 2023 | Fabian Frommelt, Andrea Fossati, Federico Uliana, Fabian Wendt, Xue Peng, Moritz Heusel, Bernd Wollscheid, Ruedi Aebersold, Rodolfo Ciuffa and Matthias Gstaiger | ETH Zurich, University of California San Francisco, J. David Gladstone Institutes, ETHZ Zurich & Evosep Biosystems | 60 SPD | Thermo Q Exactive 970 TM Plus Hybrid Quadrupole-Orbitrap | 60-spd | thermo-q-exactive-970-tm-plus-hybrid-quadrupole-orbitrap | |
| Optimizing linear ion trap data independent acquisition towards single cell proteomics | Publication | 2023 | Teeradon Phlairaharn, Zilu Ye, Elena Krismer, Anna-Kathrine Pedersen, Maik Pietzner, Jesper V. Olsen, Erwin M. Schoof and Brian C. Searle | University of Copenhagen, Technical University of Munich, Germany, Berlin Institute of Health at Charité–Universitätsmedizin & The Ohio State University | Whisper 20 SPD, Whisper 40 SPD | Thermo Orbitrap Eclipse Tribid | whisper-20spd whisper-40spd | thermo-orbitrap-eclipse-tribid | |
| Luminescence-based screening for extracellular vesicle release modulators reveals a role for PI4KIIIβ in exosome biogenesis upon lysosome inhibition | Publication | 2023 | Maarten P. Bebelman, Caitrin Crudden, Bart Snieder, Evangelia Thanou, Catharina J.M. Langedijk, Margarida Viola, Steven Eleonora, Urszula Baginska, Olaf Cotugno, Jan Paul M. Bebelman, Monique A.J. van Eijndhoven, Leontien Bosch, Ka Wan Li, Martine J. Smit | Vrije Universiteit Amsterdam, University Medical Center Utrecht, Université de Paris & Utrecht Universit | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Label-free single cell proteomics utilizing ultrafast LC and M Sinstrumentation: A valuable complementary technique to multiplexing | Publication | 2023 | Manuel Matzinger, Rupert L. Mayer & Kar l. Mechtler | Vienna BioCenter | Whisper 20 SPD, Whisper 40 SPD | whisper-20spd whisper-40spd | |||
| Mechanisms of Nuclear Pore Complex disassembly by the mitotic Polo Like Kinase 1 (PLK-1) in C. elegans embryos | Publication | 2023 | Sylvia Nkombo Nkoula, Griselda Velez-Aguilera, Batool Ossareh-Nazari, Lucie Van Hove, Cristina Ayuso, Véronique Legros, Guillaume Chevreux, Laura Thomas, Géraldine Seydoux, Peter Askjaer and Lionel Pintard | Université Paris Cité, Programme équipe Labellisée Ligue contre le Cancer, Johns Hopkins University School of Medicine & CSIC/JA/Universidad Pablo de Olavide | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Metabolic heterogeneity and cross-feeding within isogenic yeast populations captured by DILAC | Publication | 2023 | Stephan Kamrad, Clara Correia-Melo, Lukasz Szyrwiel, Simran Kaur Aulakh, Jürg Bähler, Vadim Demichev, Michael Mülleder & Markus Ralser | Charité Universitätsmedizin Berlin, The Francis Crick Institute, University College London, University of Oxford & Max Planck Institute for Molecular Genetics | Extended method | timsTOF Pro 2 | extended-method | timstof-pro-2 | |
| Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1 | Publication | 2023 | Stephen Abini-Agbomson, Kristjan Gretarsson, Rochelle M. Shih, Laura Hsieh, Tracy Lou, Pablo De Ioannes, Nikita Vasilyev, Rachel Lee, Miao Wang, Matthew Simon, Jean-Paul Armache, Evgeny Nudler, Geeta Narlikar, Shixin Liu, Chao Lu & Karim-Jean Armache | New York University Grossman School of Medicine, Columbia University Irving Medical Center, The Rockefeller University, University of California, Howard Hughes Medical Institute, Yale University & Pennsylvania State University | Extended method | Thermo Orbitrap Fusion | extended-method | thermo-orbitrap-fusion | |
| A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics | Journal article | 2023 | Thierry M. Nordmann, Lisa Schweizer, Andreas Metousis, Marvin Thielert, Edwin Rodriguez, Lise Mette Rahbek-Gjerdrum, Pia-Charlotte Stadler, Michael Bzorek, Andreas Mund, Florian A. Rosenberger & Matthias Mann | Max Planck Institute of Biochemistry, Zealand University Hospital, LMU Munich & University of Copenhagen | Whisper 20 SPD | Bruker timsTOF SCP | whisper-20spd | bruker-timstof-scp | |
| First trimester serum apolipoproteins in the prediction of late-onset preeclampsia | Publication | 2023 | Emma J. Bendix, Julie D. Ravn, Lene Sperling & Martin Overgaard | Odense University Hospital & University of Southern Denmark | 60 SPD | Thermo Altis triple quadrupole | 60-spd | thermo-altis-triple-quadrupole | |
| An Electrophysiological and Proteomic Analysis of the Effects of the Superoxide Dismutase Mimetic, MnTMPyP, on Synaptic Signalling Post-Ischemia in Isolated Rat Hippocampal Slices | Publication | 2023 | Martina Puzio, Niamh Moreton, Mairéad Sullivan, Caitriona Scaife, Jeffrey C. Glennon & John J. O’Connor | University College Dublin | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| No-stain protein labeling as a potential normalization marker for small extracellular vesicle proteins | Journal article | 2023 | Anjugam Paramanantham, Rahmat Asfiya, Siddharth Das, Grace McCully & Akhil Srivastava | University of Missouri School of Medicine | 30 SPD | timsTOF Pro 2 | 30-spd | timstof-pro-2 | |
| Mesenchyme-derived vertebrate lonesome kinase controls lung organogenesis by altering the matrisome | Journal article | 2023 | Salome M. Brütsch, Elizabeta Madzharova, Sophia Pantasis, Till Wüstemann, Selina Gurri, Heiko Steenbock, Amiq Gazdhar, Gisela Kuhn, Peter Angel, Saverio Bellusci, Jürgen Brinckmann, Ulrich auf dem Keller, Sabine Werner and Mattia R. Bordoli | ETH Zurich, Technical University of Denmark, University of Lübeck, University Hospital Bern, German Cancer Research Center, German Lung Research Center & Universities of Giessen and Marburg Lung Center | 30 SPD | Thermo Q Exactive HF-X | 30-spd | thermo-q-exactive-hf-x | |
| Proteomic characteristics and diagnostic potential of exhaled breath particles in patients with COVID-19 | Journal article | 2023 | Gabriel Hirdman, Embla Bodén, Sven Kjellström, Carl‑Johan Fraenkel, Franziska Olm, Oskar Hallgren and Sandra Lindstedt | Lund University, Department of Infection Control Region Skåne and Skåne University Hospital | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast | Journal article | 2023 | Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska, Roza Kucharczyk | Polish Academy of Sciences | Thermo Orbitrap Exploris 480 | thermo-orbitrap-exploris-480 | |||
| Characterization of a highly conserved MUC5B-degrading protease, MdpL, from Limosilactobacillus fermentum | Journal article | 2023 | Fredrik Leo, Gunnel Svensäter, Rolf Lood, Claes Wickström | Malmö University, Genovis AB, Lund University | Thermo Q Exactive HF-X | thermo-q-exactive-hf-x | |||
| Vacuum Insulated Probe Heated ElectroSpray Ionization source (VIP-HESI) enhances micro flow rate chromatography signals in the Bruker timsTOF mass spectrometer | Publication | 2023 | Mukul K. Midha, Charu Kapil, Michal Maes, David H. Baxter, Seamus R. Morrone, Timothy J. Prokop & Robert L. Moritz | Institute for Systems Biology | 100 SPD, 200 SPD, 30 SPD, 60 SPD, Extended method | Bruker timsTOF Pro | 100-spd 200-spd 30-spd 60-spd extended-method | bruker-timstof-pro | |
| A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics | Publication | 2023 | Thierry M. Nordmann, Lisa Schweizer, Andreas Metousis, Marvin Thielert, EdwinRodriguez, Lise Mette Rahbek-Gjerdrum, Pia-Charlotte Stadler, Michael Bzorek, Andreas Mund, Florian A. Rosenberger & Matthias Mann | Max Planck Institute of Biochemistry, Zealand University Hospital, University Hospital Munich & University of Copenhagen | Whisper 20 SPD | Bruker timsTOF SCP | whisper-20spd | bruker-timstof-scp | |
| Proteomic analysis identifies dysregulated proteins and associated molecular pathways in a cohort of gallbladder cancer patients of African ancestry | Journal article | 2023 | Pavan Baichan, Previn Naicker, Tanya Nadine Augustine, Martin Smith, Geofrey Candy, John Devar and Ekene Emmanuel Nweke | University of the Witwatersrand, Council for Scientifc and Industrial Research & Chris Hani-Baragwanath Academic Hospital | 60 SPD | SCIEX TripleTOF 6600 MS system | 60-spd | sciex-tripletof-6600-ms-system | |
| Label-free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to multiplexing | Journal article | 2023 | Manuel Matzinger, Rupert L. Mayer & Karl Mechtler | Vienna BioCenter | Whisper 20 SPD, Whisper 40 SPD | whisper-20spd whisper-40spd | |||
| Extracellular Vesicles Isolated from Plasma of Multiple Myeloma Patients Treated with Daratumumab Express CD38, PD-L1, and the Complement Inhibitory Proteins CD55 and CD59 | Journal article | 2022 | Kieran Brennan, Katrine F. Iversen, Alfonso Blanco-Fernández, Thomas Lund, Torben Plesner and Margaret M. Mc Gee | University College Dublin, University of Southern Denmark & Odense University Hospital | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| RGS14 is neuroprotective against seizure-induced mitochondrial oxidative stress and pathology in hippocampus | Publication | 2023 | Nicholas H Harbin, Daniel J Lustberg, Cheyenne Hurst, Jean-Francois Pare, Kathryn M Crotty, Alaina L Waters, Samantha M Yeligar, Yoland Smith, Nicholas T Seyfried, David Weinshenker and John R Hepler | Emory University School of Medicine | Extended method | Thermo Q-Exactive Plus Hybrid Quadrupole-Orbitrap | extended-method | thermo-q-exactive-plus-hybrid-quadrupole-orbitrap | |
| SENP2 knockdown in human adipocytes reduces glucose metabolism and lipid accumulation, while increases lipid oxidation | Journal article | 2023 | Solveig A. Krapf, Jenny Lund, Hege G. Bakke, Tuula A. Nyman, Stefano Bartesaghi, Xiao-Rong Peng, Arild C. Rustan, G. Hege Thoresen and Eili T. Kase | University of Oslo, Oslo University Hospital & AstraZeneca | Extended method | SCIEX TripleTOF 6600 MS system | extended-method | sciex-tripletof-6600-ms-system | |
| Systematic Adaptation of Bacillus licheniformis to 2-Phenylethanol Stress | Journal article | 2023 | Yangyang Zhan,Haixia Xu, Hween Tong Tan, Ying Swan Ho, Dongxiao Yang, Shuwen Chen, Dave Siak-Wei Ow, Xin Lv, Fang Wei, Xuezhi Bi and Shouwen Chen | Hubei University, Bioprocessing Technology Institute (BTI) & Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences | 30 SPD | SCIEX TripleTOF 6600 MS system | 30-spd | sciex-tripletof-6600-ms-system | |
| A chemoproteomic platform for reactive fragment profiling against the deubiquitinases | Journal article | 2023 | Rosa Cookson, Aini Vuorinen, Jonathan Pettinger, Cassandra R. Kennedy, Joanna M. Kirkpatrick, Rachel E. Peltier-Heap, Andrew Powell, Ambrosius P. Snijders, Mark Skehel, David House, Katrin Rittinger and Jacob T. Bush | GSK & The Francis Crick Institute | 30 SPD, 60 SPD | Thermo Orbitrap Fusion Lumos | 30-spd 60-spd | thermo-orbitrap-fusion-lumos | |
| BRM Complex in Arabidopsis Adopts ncBAF-like Composition and Requires BRD Subunits for Assembly and Stability | Journal article | 2023 | Paulina Stachula, Katarzyna Kapela, Ewelina Malecka, Kamila Jaronczyk, Jacek Patryn, Nina Siwirykow, Maria Bucholc, Malgorzata Marczak, Maciej Kotlinski and Rafal Archacki | University of Warsaw & Institute of Biochemistry and Biophysics PAS | Extended method | Thermo Orbitrap Exploris 480 | extended-method | thermo-orbitrap-exploris-480 | |
| Exploiting Multi-Omics Profiling and Systems Biology to Investigate Functions of TOMM34 | Journal article | 2023 | Ekaterina V. Poverennaya, Mikhail A. Pyatnitskiy, Georgii V. Dolgalev, Viktoria A. Arzumanian, Olga I. Kiseleva, Ilya Yu. Kurbatov, Leonid K. Kurbatov, Igor V. Vakhrushev, Daniil D. Romashin, Yan S. Kim and Elena A. Ponomarenko | Institute of Biomedical Chemistry Moscow & Faculty Of Computer Science & National Research University Higher School of Economics Moscow | 30 SPD | Thermo Q Exactive | 30-spd | thermo-q-exactive | |
| β-oxidation–polyhydroxyalkanoates synthesis relationship in Pseudomonas putida KT2440 revisited | Journal article | 2023 | Si Liu, Tanja Narancic, Jia‑Lynn Tham & Kevin E. O’Connor | University College Dublin | 30 SPD | timsTOF Pro | 30-spd | timstof-pro | |
| Unique DUOX2+ACE2+ small cholangiocytes are pathogenic targets for primary biliary cholangitis | Publication | 2023 | Xi Li, Yan Li, Jintao Xiao, Huiwen Wang, Yan Guo, Xiuru Mao, Pan Shi, Yanliang Hou, Xiaoxun Zhang, Nan Zhao, Minghua Zheng, Yonghong He, Jingjing Ding, Ya Tan, Min Liao, Ling Li, Ying Peng, Xuan Li, Qiong Pan, Qiaoling Xie, Qiao Li, Jianwei Li, Ying Li, Z | Daping Hospital, Xiangya Hospital, Central South University, the First Affiliated Hospital of Wenzhou Medical University, ale University School of Medicine, | Bruker timsTOF | bruker-timstof | |||
| Extending the Range of SLIM-Labeling Applications: From Human Cell Lines in Culture to Caenorhabditis elegans Whole-Organism Labeling | Publication | 2023 | Laurent Lignieres, Nicolas Sénécaut, Tien Dang, Laura Bellutti, Marion Hamon, Samuel Terrier, Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, René-Marc Mege, Julien Dumont, and Jean-Michel Camadro | Université Paris Cité, Institut de Biologie Physico-Chimique, Institut de Biologie Physico-Chimique Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, René-Marc Mege, ̀ Julien Dumont,Institut de Biologie Physico-Chimique, Institut de Biologie Intégra | 30 SPD | Thermo Orbitrap Fusion | 30-spd | thermo-orbitrap-fusion | |
| Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer | Publication | 2023 | Antonela Merlotti, Benjamin Sadacca, Yago A. Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira, | Université Paris Sciences et Lettres, Laboratory of Clinical immunology, Institute Mutualiste Montsouris, Dana-Farber Cancer Institute, Institut d’Investigacions Biomèdiques de Barcelona-CSIC, Dana-Farber Cancer Institute | Thermo Q Exactive | thermo-q-exactive | |||
| Quantitative multi-organ proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation | Publication | 2023 | Lisa Schweizer, Tina Schaller, Maximilian Zwiebel, Özge Karayel, Johannes B. Müller-Reif, Wen-Feng Zeng, Sebastian Dintner, Klaus Hirschbühl, Bruno Märkl, Rainer Claus, Matthias Mann | Max-Planck Institute of Biochemistry, University Medical Center Augsburg, | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| PRMT5-mediated regulatory arginine methylation of RIPK3 | Publication | 2023 | Chanchal Chauhan, Ana Martinez-Val, Rainer Niedenthal, Jesper Velgaard Olsen, Alexey Kotlyarov, Simon Bekker-Jensen, Matthias Gaestel & Manoj B. Menon | Hannover Medical School, University of Copenhagen, Indian Institute of Technology Delhi | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Identification of Highly Sensitive Pleural Effusion Protein Biomarkers for Malignant Pleural Mesothelioma by Affinity-Based Quantitative Proteomics | Publication | 2023 | Nicolai B. Palstrøm, Martin Overgaard, Peter Licht , Hans C. Beck | Odense University Hospital, University of Southern Denmark, | 60 SPD | Thermo Altis triple quadrupole | 60-spd | thermo-altis-triple-quadrupole | |
| Differential proteomic profile of lumbar and ventricular cerebrospinal fluid | Publication | 2023 | Nina Rostgaard, Markus Harboe Olsen, Maud Ottenheijm, Lylia Drici, Anja Hviid Simonsen, Peter Plomgaard, Hanne Gredal, Helle Harding Poulsen, Henrik Zetterberg, Kaj Blennow, Steen Gregers Hasselbalch, Nanna MacAulay, Marianne Juhler | Copenhagen University Hospital, University of Copenhagen, University of Gothenburg, | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Recent advances in the field of single-cell proteomics | Journal article | 2023 | Valdemaras Petrosius and Erwin M. Schoof | Technical University of Denmark | Whisper 20 SPD, Whisper 40 SPD | whisper-20spd whisper-40spd | |||
| Comparative proteome and transcriptome analyses of the response of postharvest pears to Penicillium expansum infection | Journal article | 2023 | Meiqiu Xu, Esa Abiso Godana, Solairaj Dhanasekaran, Xiaoyun Zhang, Qiya Yang, Lina Zhao and Hongyin Zhang | Jiangsu University, Luoyang Normal University | timsTOF Pro 2 | timstof-pro-2 | |||
| Chromatographic separation of peptides and proteins for characterization of proteomes | Journal article | 2022 | Yu Liang, Lihua Zhang and Yukui Zhang | Chinese Academy of Science | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Insight into the antibacterial mechanism of Cuenriched sol–gel coatings employing proteomics | Journal article | 2022 | Francisco Romero-Gavilán, Iñaki García-Arnáez, Andreia Cerqueira, Loredana Scalschi, Begonya Vicedo, Alejandro Villagrasa, Raúl Izquierdo, Mikel Azkargorta, Félix Elortza, Mariló Gurruchaga, Isabel Goñi and Julio Suay | Universitat Jaume I, Universidad del País Vasco, CIC bioGUNE | timsTOF Pro | timstof-pro | |||
| Proteomic evaluation of human osteoblast responses to titanium implants over time | Journal article | 2022 | Francisco Romero-Gavilán, Andreia Cerqueira, Iñaki García-Arnáez, Mikel Azkargorta, Félix Elortza, Marilo Gurruchaga, Isabel Goñi and Julio Suay | Universitat Jaume I, Universidad del País Vasco, CIC bioGUNE | 30 SPD | timsTOF Pro | 30-spd | timstof-pro | |
| A targeted multiplex mass spectrometry method for quantitation of abundant matrix and cellular proteins in formalin-fixed paraffin embedded arterial tissue | Journal article | 2022 | Anne-Sofie Faarvang Thorsen, Lars Peter Schødt Riber, Lars Melholt Rasmussen and Martin Overgaard | Odense University Hospital. University of Southern Denmark. Steno Diabetes Center Odense. | 60 SPD | Thermo Altis triple quadrupole | 60-spd | thermo-altis-triple-quadrupole | |
| Hybrid-DIA: Intelligent Data Acquisition for Simultaneous Targeted and Discovery Phosphoproteomics in Single Spheroids | Journal article | 2022 | Ana Martínez-Val, Kyle Fort, Claire Koenig, Leander Van der Hoeven, Giulia Franciosa, Thomas Moehring , Yasushi Ishihama, Yu-ju Chen, Alexander Makarov, Yue Xuan and Jesper V. Olsen | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen. Thermo Fisher Scientific. Kyoto University. Academia Sinica | Whisper 40 SPD | Thermo Orbitrap Exploris 480 | whisper-40spd | thermo-orbitrap-exploris-480 | |
| MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer’s Biomarker Data | Publication | 2022 | Frank Koopmans, Ka Wan Li, Remco V. Klaassen, and August B. Smit | VU University | 30 SPD | timsTOF Pro | 30-spd | timstof-pro | |
| Ultra-high sensitivity for targeted clinical proteomics using Evosep-MRM | Poster | 2022 | Angela McArdle, Dorte B. Bekker-Jensen, Bharath Kumar Raghuraman, Nicolai Bache | Evosep Biosystems | Whisper | Agilent 6495 Triple Quadrupole | whisper | agilent-6495-triple-quadrupole | |
| A complete and automated sample preparation strategy for high-throughput and standardized proteomics, applied to a clinical cohort of patient plasma samples | Poster | 2022 | Dorte B. Bekker-Jensen, Florian Harking, Magnus Huusfeldt, Ole Østergaard, Lasse Falkenby, Line Vinderslev Iversen, Jakob Bunkenborg, Angie McArdle, Ole B. Hørning, Nicolai Bache, Jesper V. Olsen | Evosep Biosystems, University of Copenhagen, Statens Serum Institut, Bispebjerg University Hospital, | 500 SPD, Whisper 40 SPD | Bruker timsTOF Pro | 500-spd whisper-40spd | bruker-timstof-pro | |
| Pushing the boundaries for robust and high-throughput single cell analysis with Whisper Flow technology powered by dia-PASEF | Poster | 2022 | Dorte B. Bekker-Jensen, Christoph Krisp, David Hartlmayr, Anjali Seth, Ole B. Hørning, Moritz Heusel, Magnus Huusfeldt, Andreia Almeida, Markus Lubeck, Gary Kruppa, Jarrod Sandow, Nicolai Bache | Evosep Biosystems, Bruker Daltonics GmBH & Co. KG, Cellenion, IonOpticks, Bruker s.r.o, Brno | Whisper 40 SPD | Bruker timsTOF SCP | whisper-40spd | bruker-timstof-scp | |
| Proteomic profiling of cerebrospinal fluid in pediatric myelin oligodendrocyte glycoprotein antibody-associated disease | Publication | 2022 | Yi‑Long Wang, Meng‑Ying Zhu, Zhe‑Feng Yuan, Xiao‑Yan Ren, Xiao‑Tong Guo, Yi Hua, Lu Xu, Cong‑Ying Zhao, Li‑Hua Jiang, Xin Zhang, Guo‑Xia Sheng, Pei‑Fang Jiang, Zheng‑Yan Zhao, Feng Gao | Zhejiang University School of Medicine | Thermo Q Exactive | thermo-q-exactive | |||
| Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome | Publication | 2022 | Florian A. Rosenberger, Marvin Thielert, Maximilian T. Strauss, Constantin Ammar, Sophia C. Mädler, Lisa Schweizer, Andreas Metousis, Patricia Skowronek, Maria Wahle, Janine Gote-Schniering, Anna Semenova, Herbert B. Schiller, Edwin Rodriguez, Thierry M. | Max Planck Institute of Biochemistry, Martinsried, Germany. Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark. Evosep Biosystems, Denmark. Bruker Daltonik, Germany and United States. Helmholtz Zentrum München, Germany. | 30 SPD | Bruker timsTOF SCP | 30-spd | bruker-timstof-scp | |
| A complete, automated Opentrons OT-2 loading protocol for simplified sample loading of Evotip Pure | Application note | 2022 | Evosep | 100 SPD, 500 SPD, Whisper 40 SPD | Bruker timsTOF Pro | 100-spd 500-spd whisper-40spd | bruker-timstof-pro | ||
| Rapid and robust PTM peptide mapping for biologics with the Evosep One and the SCIEX ZenoTOF 7600 | Application note | 2022 | Evosep | 100 SPD, 300 SPD, 60 SPD | SCIEX ZenoTOF 7600 | 100-spd 300-spd 60-spd | sciex-zenotof-7600 | ||
| Pushing the boundaries for robust and high-throughput single cell analysis | Application note | 2022 | Evosep | Whisper 40 SPD | Bruker timsTOF SCP | whisper-40spd | bruker-timstof-scp | ||
| Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway | Publication | 2022 | Valdemaras Petrosius, Jan Benada, Olaf Nielsen, Erwin Marten Schoof, Claus Storgaard Sørensen | University of Copenhagen, Technical University of Denmark | 30 SPD | Thermo Fisher Ultimate 3000 | 30-spd | thermo-fisher-ultimate-3000 | |
| Robust dimethyl-based multiplex-DIA workflow doubles single-cell proteome depth via a reference channel | Publication | 2023 | Marvin Thielert, Corazon Ericka Mae Itang, Constantin Ammar, Florian A Schober, Isabell Bludau, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Fabian J Theis, Martin Steger, Matthias Mann | Max Planck Institute of Biochemistry, Boehringer Ingelheim Pharma GmbH & Co, German Research Center for Environmental Health, Technical University of Munich, NEOsphere Biotechnologies GmbH, University of Copenhagen | Whisper 40 SPD | Bruker timsTOF SCP | whisper-40spd | bruker-timstof-scp | |
| Restoring cellular magnesium balance through Cyclin M4 protects against acetaminophen-induced liver damage | Publication | 2022 | Irene González-Recio, Jorge Simón, Naroa Goikoetxea-Usandizaga, Marina Serrano-Maciá, Maria Mercado-Gómez, Rubén Rodríguez-Agudo, Sofía Lachiondo Ortega, Clàudia Gil-Pitarch, Carmen Fernández-Rodríguez, Donatello Castellana, Maria U. Latasa, Leticia Abeci | CIC bioGUNE, Universidad de Navarra, Marqués de Valdecilla University Hospital, McGill University, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), University of the Basque Country (UPV/EHU), Silence Therapeutic | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Enhancing single-cell proteomics through tailored Data-Independent Acquisition and micropillar array-based chromatography | Publication | 2022 | Valdemaras Petrosius, Pedro Aragon-Fernandez, Nil Üresin, Teeradon Phlairaharn, Benjamin Furtwängler, Jeff op de Beeck, Simon Francis Thomsen, Ulrich auf dem Keller, Bo T. Porse, Erwin M. Schoof | Technical University of Denmark, University of Copenhagen | Whisper 20 SPD | Thermo Orbitrap Eclipse Tribid | whisper-20spd | thermo-orbitrap-eclipse-tribid | |
| Characterization of TGF-β signaling in a human organotypic skin model reveals that loss of TGF-βRII induces invasive tissue growth | Publication | 2022 | Zilu Ye, Gülcan Kilic, Sally Dabelsteen, Irina N. Marinova, Jens F. B. Thøfner, Ming Song, Asha M. Rudjord-Levann, Ieva Bagdonaite, Sergey Y. Vakhrushev, Cord H. Brakebusch, Jesper V. Olsen, Hans H. Wandall | University of Copenhagen | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Two Subgroups within the GH43_36 α-l-Arabinofuranosidase Subfamily Hydrolyze Arabinosyl from Either Mono-or Disubstituted Xylosyl Units in Wheat Arabinoxylan | Publication | 2022 | Kai P. Leschonski, Svend G. Kaasgaard,Nikolaj Spodsberg, Kristian B. R. M. Krogh, Mirjam A. Kabel | Novozymes A/S, Wageningen University | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Plasma proteomic profling in postural orthostatic tachycardia syndrome (POTS) reveals new disease pathways | Publication | 2022 | Madeleine Johansson, HongYan, Charlotte Welinder, ÁkosVégvári, Viktor Hamrefors, Magnus Bäck, Richard Sutton, Artur Fedorowski | Skåne University Hospital, Swedish National Infrastructure for Biological Mass Spectrometry, Karolinska Institutet, Lund University, | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Programmed death ligand 1 intracellular interactions with STAT3 and focal adhesion protein Paxillin facilitate lymphatic endothelial cell remodeling | Publication | 2022 | Johnathon B. Schafer, Erin D. Lucas, PhD, Monika Dzieciettkowska, Tadg Forward, Beth A. Jirón Tamburini | University of Colorado School of Medicine, | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Correlation between biological responses in vitro and in vivo to Ca-doped sol-gel coatings assessed using proteomic analysis | Publication | 2022 | I. García-Arnáeza, F. Romero-Gavilán, A. Cerqueira, F. Elortza, M. Azkargorta, F. Muñoz, M. Mata, J.J. Martín de Llano, J. Suay, M. Gurruchaga, I.Goñia | University of the Basque Country, Universitat Jaume, Basque Research and Technology Alliance, Campus Universitario, iBoneLab SL, University of Valencia, Research Institute of the University Clinical Hospital of Valencia | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Slice-PASEF: fragmenting all ions for maximum sensitivity in proteomics | Publication | 2022 | Lukasz Szyrwiel, Ludwig Sinn, Markus Ralser, Vadim Demichev | Universitätsmedizin Berlin, University of Oxford | 200 SPD | Bruker timsTOF Pro | 200-spd | bruker-timstof-pro | |
| Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition | Publication | 2022 | Patricia Skowronek, Florian Krohs, Markus Lubeck, Georg Wallmann, Ericka Itang, Polina Koval, Maria Wahle, Marvin Thielert, Florian Meier, Sander Willems, Oliver Raether, Matthias Mann | Max Planck Institute of Biochemistry, Bruker Daltonics GmbH & Co. KG Bremen, Kyiv Academic University, Jena University Hospital, Bruker Belgium, NNF Center for Protein Research, | 100 SPD, 60 SPD | Bruker timsTOF Pro | 100-spd 60-spd | bruker-timstof-pro | |
| Enhanced drug delivery by a prodrug approach effectively relieves neuroinflammation in mice | Publication | 2022 | Ahmed Montaser, Janita Kuiri, Teemu Natunen, Pavel Hruska, David Potesil, Seppo Auriola, Mikko Hiltunen, Tetsuya Terasaki, Marko Lehtonen, Aaro Jalkanen, Kristiina M Huttunen | University of Eastern Finland, Masaryk University, Tohoku University, | |||||
| Kinase Inhibitor Pulldown Assay (KiP) for Clinical Proteomics | Publication | 2022 | Alexander B Saltzman, Doug W Chan, Matthew V Holt, Junkai Wang, Eric J Jaehnig, Meenakshi Anurag, Purba Singh, Anna Malovannaya, Beom-Jun Kim, Matthew J Ellis | Baylor College of Medicine, MD Anderson Cancer Center, AstraZeneca, | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| On the potential of micro-flow LC-MS/MS in proteomics | Publication | 2022 | Yangyang Bian, Chunli Gao, Bernhard Kuster, | Northwest University, Technical University of Munich | 300 SPD | AB Sciex TripleTOF 6600 | 300-spd | ab-sciex-tripletof-6600 | |
| Autophagy regulates neuronal excitability by controlling cAMP/protein kinase A signaling at the synapse | Publication | 2022 | Melina Overhoff, Frederik Tellkamp, Simon Hess, Marianna Tolve, Janine Tutas, Marcel Faerfers, Lotte Ickert, Milad Mohammadi, Elodie De Bruyckere, Emmanouela Kallergi, Andrea Delle Vedove, Vassiliki Nikoletopoulou, Brunhilde Wirth, Joerg Isensee, Tim Huch | University of Cologne, University of Lausanne, Leibniz Institute for Molecular Pharmacology, German Center for Neurodegenerative Diseases | Whisper 20 SPD | Thermo Q Exactive 480 | whisper-20spd | thermo-q-exactive-480 | |
| A Parallelization Strategy for the Time Efficient Analysis of Thousands of LC/MS Runs in High-Performance Computing Environment | Publication | 2022 | Patrick van Zalm, Arthur Viodé, Kinga Smolen, Benoit Fatou, Arash Nemati Hayati, Christoph N. Schlaffner, Ofer Levy, Judith Steen, Hanno Steen | Boston Children's Hospital | Bruker timsTOF Pro | bruker-timstof-pro | |||
| 2-O-Methylation of the second transcribed nucleotide within the mRNA 5 cap impacts the protein production level in a cell-specific manner and contributes to RNA immune evasion | Journal article | 2022 | Karolina Drazkowska, Rafal Tomecki, Marcin Warminski, Natalia Baran, Dominik Cysewski, Anaıs Depaix, Renata Kasprzyk, Joanna Kowalska, Jacek Jemielity, Pawel J. Sikorski | University of Warsaw, Polish Academy of Sciences, Medical University of Bialystok | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Common variable immunodeficiency in two kindreds with heterogeneous phenotypes caused by novel heterozygous NFKB1 mutations | Publication | 2022 | Frederik Staels, Kerstin De Keukeleere, Matias Kinnunen, Salla Keskitalo, Flaminia Lorenzetti, Michiel Vanmeert, Teresa Prezzemolo, Emanuela Pasciuto, Eveline Lescrinier, Xavier Bossuyt, Margaux Gerbaux, Mathijs Willemsen, Julika Neumann, Sien Van Loo, An | KU Leuven, University of Helsinki, University Hospitals Leuven, Babraham Institute | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| SARS-CoV-2 Production, Purification Methods and UV Inactivation for Proteomics and Structural Studies Inactivation for Proteomics and Structural Studies | Publication | 2022 | Zlatka Plavec, Aušra Domanska, Xiaonan Liu, Pia Laine, Lars Paulin, Markku Varjosalo, Petri Auvinen, Sharon G. Wolf, Maria Anastasina, Sarah J. Butcher | Molecular and Integrative Biosciences Research Programme, University of Helsinki, Weizmann Institute pf Science, | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Optimizing data points per protein increases protein identifications while maintaining quantitative precision in short gradient data-independent acquisition proteomics | Publication | 2022 | Joerg Doellinger, Christian Blumenscheit, Andy Schneider, Peter Lasch | Robert Koch-Institute | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074, and THR1075) within the COR GTPase domain | Publication | 2022 | Asad U. Malik, Athanasios Karapetsas, Raja S. Nirujogi, Sebastian Mathea, Prosenjit Pal, Pawel Lis, Matthew Taylor, Elena Purlyte, Robert Gourlay, Mark Dorward, Simone Weidlich, Rachel Toth, Nicole K. Polinski, Stefan Knapp, Francesca Tonelli & Dario R Al | University of Dundee, Collaborative Research Network, Johann Wolfgang Goethe University, AB Sciex | 30 SPD | Thermo Orbitrap Exploris 240 | 30-spd | thermo-orbitrap-exploris-240 | |
| Endosomal Chemokine Receptor Signalosomes Regulate Central Mechanisms Underlying Cell Migration | Publication | 2022 | Hyunggu Hahn, Carole Daly, John Little IV, Nicole A. Perry Hauser, Asuka Inoue, Bianca Plouffe, Alex R. B. Thomsen | New York University College of Dentistry, Queen’s University Belfast, Columbia University Vagelos College of Physicians and Surgeons, Tohoku University | Thermo Q Exactive HF-X | thermo-q-exactive-hf-x | |||
| Rapid profiling of protein complex re-organization in perturbed systems | Publication | 2022 | Isabell Blau, Charlotte Nicod, Claudia Martelli, Peng Xue, Moritz Heusel Andreas Fossati, Federico Uliana, Fabian Frommelt, Ruedi Aabersold, Ben C. Collins | ETH Zürich, Max Planck Institute of Biochemistry, Lund University, University of California San Francisco, J. David Gladstone Institutes, Queen's University of Belfast | 60 SPD | AB Sciex TripleTOF 6600 | 60-spd | ab-sciex-tripletof-6600 | |
| Cellular proteomic profiling using proximity labelling by TurboID-NES in microglial and neuronal cell lines | Publication | 2022 | Sydney Sunna, Christine Bowen, Hollis Zeng, Struti Rayaprolu, Prateek Kumar, Pritha Bagchi, Duc M. Duong, Sara Bitarafan, Aditya Natu, Levi Wood, Nicholas T. Seyfried, Srikant Rangaraju | Emory University, Georgia Institute of Technology | 30 SPD | Thermo Q Exactive | 30-spd | thermo-q-exactive | |
| Structural studies reveal that endosomal cations promote formation of 2 infectious CVA9 A particles, facilitating RNA and VP4 release. | Publication | 2022 | Aušra Domanska, Zlatka Plavec, Visa Ruokolainen, Benita Löflund, Varpu Marjomäki, Sarah J Butcher | Faculty of Biological and Environmental Sciences, Molecular and Integrative Bioscience Research Programme, and Helsinki Institute of Life Sciences-Institute of Biotechnology, University of Helsinki, Helsinki, Finland | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Extended detection of anabolics misuse in high-throughput doping controls with the Evosep One | Application note | 2022 | Evosep | 100 SPD | 100-spd | ||||
| The spike of SARS-CoV-2 promotes metabolic rewiring in hepatocytes | Publication | 2022 | Maria Mercado-Gómez, Endika Prieto-Fernández, Naroa Goikoetxea-Usandizaga, Laura Vila-Vecilla, Mikel Azkargorta. Miren Bravo, Marina Serrano-Maciá, Leire Egia-Mendikute, Rubén Rodríguez-Agudo, Sofia Lachiondo-Ortega, So Young Lee, Alvaro Eguileor Giné | CIC bioGUNE, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas, IIS Hospital La Fe, University of Valencia, Basque Foundation for Science, University of the Basque Country, Centro de Investigación Biomédica En Red de Enferme | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Biomarkers in Neurodegenerative Diseases: Proteomics Spotlight on ALS and Parkinson’s Disease | Publication | 2022 | Rekha Raghunathan, Kathleen Turajane and Li Chin Wong | International Journal of Molecular Sciences | |||||
| Coordinated control of the ADP-heptose/ALPK1 signalling network by the E3 ligases TRAF6, TRAF2/c-IAP1 and LUBAC. | Publication | 2022 | Tom Snelling, Natalia Shpiro, Robert Gourlay, Frederic Lamoliatte and Philip Cohen | University of Dundee | Thermo Orbitrap Exploris 240 | thermo-orbitrap-exploris-240 | |||
| Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells | Publication | 2022 | Camille Ternet, Philipp Junk, Thomas Sevrin, Simona Catozzi, Giorgio Oliviero, Kieran Wynne and Christina Kiel | University College Dublin, University of Pavia | Bruker timsTOF Pro | bruker-timstof-pro | |||
| The addition of FAIMS increases targeted proteomics sensitivity from FFPE tumor biopsies | Publication | 2022 | Steve Sweet, David Chain, WenYu, Philip Martin, Marlon Rebelatto, Andrew Chambers, Fabiola Cecchi and Yeoun Jin Kim | AstraZeneca | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| High-throughput mass spectrometry maps the sepsis plasma proteome and differences in response | Publication | 2022 | Yuxin Mi, Katie L Burnham, Philip D Charles, Raphael Heilig, Iolanda Vendrell, Justin Whalley, Hew D Torrance, David B Antcliffe, Shaun M May, Matt J Neville, Georgina Berridge. Paula Hutton, Cyndi Goh, Jayachandran Radhakrishnan, Alexey Nesvizhskii, | University of Oxford, Wellcome Genome Campus, Imperial College London, Queen Mary University of London, NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, University of Michigan, Imperial College Healthcare NHS Trust | 100 SPD | Bruker timsTOF Pro | 100-spd | bruker-timstof-pro | |
| Widespread hydroxylation of unstructured lysine-rich protein domains by JMJD6 | Publication | 2022 | Matthew E. Cockman, Yoichiro Sugimoto, Hamish B. Pegg, Norma Masson, Eidarus Salah, Anthony Tumber, Helen R. Flynn, Joanna M. Kirkpatrick, Christopher J. Schofield and Peter J. Ratcliffe | Francis Crick Institute | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| High throughput and high confidence sequence variant analysis in therapeutic antibodies using Evosep One liquid chromatography tandem mass spectrometry with synthetic heavy peptides | Publication | 2022 | Tyler Greer, Reid O'Brien Johnson, Song Nie, Milos Cejkov, Xiaojing Zheng & Ning Li | Regeneron Pharmaceuticals Inc | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| Osteocytes Serve as a Reservoir for Intracellular Persisting Staphylococcus aureus Due to the Lack of Defense Mechanisms | Publication | 2022 | Marina Garcia-Moreno, Paul M. Jordan, Kerstin Günther, Therese Dau, Christian Fritzsch, Monika Vermes, Astrid Schoppa, Anita Ignatius, Britt Wildemann, Oliver Werz, Bettina Löffler & Lorena Tuchscherr | Jena University Hospital, Friedrich Schiller University Jena, Leibniz Institute on Aging & University Medical Center Ulm | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Neddylation tunes peripheral blood mononuclear cells immune response in COVID-19 patients | Publication | 2022 | Marina Serrano-Maciá, Sofia Lachiondo-Ortega, Paula Iruzubieta, Naroa Goikoetxea-Usandizaga, Alexandre Bosch, Leire Egia-Mendikute, Borja Jiménez-Lasheras, Mikel Azkargorta, Félix Elortza, Diana Martinez-Redondo, Begoña Castro, Juan J. Lozano, Ruben Nogue | CIC bioGUNE-BRTA, IDIVAL, CIC bioGUNE, CIBEREHD, University of Santiago de Compostela-Instituto de Investigación Sanitaria, Centro de Investigación Biomédica en Red, GAIN, Universidad de Cantabria, Ikerbasque & Basque Foundation for Science | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles | Publication | 2022 | Pablo F. Céspedes, Ashwin Jainarayanan, Lola Fernández-Messina, Salvatore Valvo, David G. Saliba, Elke Kurz, Audun Kvalvaag, Lina Chen, Charity Ganskow, Huw Colin-York, Marco Fritzsche, Yanchun Peng, Tao Dong, Errin Johnson, Jesús A. Siller-Farfán, Omer D | The University of Oxford, Autónoma de Madrid, Centro Nacional de Investigaciones Cardiovasculares (CNIC), University of Oxford, Karolinska Institutet | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| High-throughput quantitative proteomics using Zeno SWATH data-independent analysis (DIA) and the Evosep One system | Application note | 2022 | Ihor Batruch, Yves Le Blanc and Christie Hunter | SCIEX | 100 SPD, 200 SPD, 30 SPD, 60 SPD | SCIEX ZenoTOF 7600 | 100-spd 200-spd 30-spd 60-spd | sciex-zenotof-7600 | |
| Rapid and in-depth coverage of the (phospho-)proteome with deep libraries and optimal window design for dia-PASEF | Publication | 2022 | Patricia Skowronek, Marvin Thielert, Eugenia Voytik, Maria C. Tanzer, Fynn M. Hansen, Sander Willems, Özge Karayel, Andreas-David Brunner, Florian Meier, Matthias Mann | Max Planck Institute of Biochemistry, Jena University Hospital, University of Copenhagen | 100 SPD, 30 SPD, 60 SPD | Bruker timsTOF Pro | 100-spd 30-spd 60-spd | bruker-timstof-pro | |
| Application of In-Cell Fast Photochemical Oxidation of Proteins for the Study of Organoids | Application note | 2022 | Raquel Shortt, Lisa M. Jones | University of Maryland, University of California | Thermo Orbitrap Fusion Lumos | thermo-orbitrap-fusion-lumos | |||
| Brain proteome profling implicates the complement and coagulation cascade in multiple system atrophy brain pathology | Publication | 2022 | Rasmus Rydbirk, Ole Østergaard, Jonas Folke, Casper Hempel, Brian DellaValle, Thomas L. Andresen, Annemette Løkkegaard, Anne‑Mette Hejl, Matthias Bode, Morten Blaabjerg, Mette Møller, Erik H. Danielsen, Lisette Salvesen, Charlotte C. Starhof, Sara Bech | Copenhagen University Hospital, University of Copenhagen, Technical University of Denmark, GLX Analytix ApS, Odense University Hospital, Aarhus University Hospital | 30 SPD | Thermo Q Exactive HF-X | 30-spd | thermo-q-exactive-hf-x | |
| Noninvasive proteomic biomarkers for alcohol-related liver disease | Publication | 2022 | Lili Niu , Maja Thiele , Philipp E. Geyer, Ditlev Nytoft Rasmussen, Henry Emanuel Webel, Alberto Santos, Rajat Gupta, Florian Meier , Maximilian Strauss , Maria Kjaergaard , Katrine Lindvig, Suganya Jacobsen, Simon Rasmussen , Torben Hansen , Aleksander K | University of Copenhagen, Max Planck Institute of Biochemistry, Odense University Hospital, University of Southern Denmark, Jena University Hospital, University of Oxford, Pfizer Worldwide Research and Development | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Advances in data‐independent acquisition massspectrometry towards comprehensive digital proteomelandscape | Publication | 2022 | Reta Birhanu Kitata, Jhih‐Ci Yang, Yu‐Ju Chen | Academia Sinica, National Yang Ming Chiao Tung University, National Taiwan University | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Engineered SH2 Domains for Targeted Phosphoproteomics | Publication | 2022 | Gregory D. Martyn, Gianluca Veggiani, Ulrike Kusebauch, Seamus R. Morrone, Bradley P. Yates, Alex U. Singer, Jiefei Tong, Noah Manczyk, Gerald Gish, Zhi Sun, Igor Kurinov, Frank Sicheri, Michael F. Moran, Robert L. Moritz and Sachdev S. Sidhu | University of Toronto, Institute for Systems Biology Washington, Hospital for Sick Children Toronto, Mount Sinai Hospital, Cornell University | |||||
| Proteomic phenotype of cerebral organoids derived from autism spectrum disorder patients reveal disrupted energy metabolism, cellular components, and biological processes | Publication | 2022 | Mirolyuba Ilieva, Blanca Irene Aldana, Kasper Tore Vinten, Sonja Hohmann, Thomas William Woofenden, Renate Lukjanska, Helle S Waagepetersen, Tanja Maria Michel | University of Southern Denmark, Odense University Hospital, Aalborg University, University of Copenhagen | 30 SPD | Thermo Orbitrap Fusion | 30-spd | thermo-orbitrap-fusion | |
| Pancreatic INS-1 β-Cell Response to Thapsigargin and Rotenone: A Comparative Proteomics Analysis Uncovers Key Pathways of β-Cell Dysfunction | Publication | 2022 | Mehari Muuz Weldemariam, Jongmin Woo & Qibin Zhang | University of North Carolina at Greensboro | |||||
| Proteomics of human biological fluids for biomarker discoveries: technical advances and recent applications | Publication | 2022 | Loïc Dayon, Ornella Cominetti & Michael Affolter | Proteomics, Bioanalytics Department, Nestlé Institute of Food Safety & Analytical Sciences, Institut des Sciences et Ingénierie Chimiques | |||||
| Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications | Publication | 2022 | Hironori Sato, Daisuke Nakajima, Masaki Ishikawa, Ryo Konno, Ren Nakamura, Osamu Ohara, & Yusuke Kawashima | Department of Applied Genomics, Kazusa DNA Research Institute, Department of Pediatrics, Graduate School of Medicine, Chiba University | |||||
| Inflammation-induced downregulation of succinate dehydrogenase regulates adrenocortical function | Publication | 2022 | Ivona Mateska, Anke Witt, Eman Hagag, Anupam Sinha, Canelif Yilmaz, Evangelia Thanou, Na Sun, Ourania Kolliniati, Maria Patschin, Heba Abdelmegeed, Holger Henneicke, Waldemar Kanczkowski, Ben Wielockx, Christos Tsatsanis, Andreas Dahl, Axel Walch, Ka Wan | Technische Universität Dresden, Germany, Vrije Universiteit, Netherlands, Helmholtz Centrum München, Germany, University of Crete, Greece | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Zwitter-ionic monolith-based spintip column coupled with Evosep One liquid chromatography for high-throughput proteomic analysis | Publication | 2022 | Yiran Su, Xi Wang, Yun Yang, Lijun Yang, Ruilian Xu, Ruijun Tian | Southern Univrsity of Science and Technology, China, Jinan University, China, | Whisper 20 SPD | Bruker timsTOF Pro | whisper-20spd | bruker-timstof-pro | |
| Ultra sensitive and high throughput proteomics on the standardized Evosep One platform | Webinar | 2021 | Jesper Olsen, Erwin M. Schoof | University of Copenhagen, Technical University of Denmark | Whisper 20 SPD, Whisper 40 SPD | Thermo Orbitrap Exploris 480 | whisper-20spd whisper-40spd | thermo-orbitrap-exploris-480 | |
| A Non-Hazardous Deparaffinization Protocol Enables Quantitative Proteomics of Core Needle Biopsy-Sized Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Specimens | Publication | 2022 | Georgia Mitsa, Qianyu Guo, Christophe Goncalves, Samuel E J Preston, Vincent Lacasse, Adriana Aguilar-Mahecha, Naciba Benlimame, Mark Basik, Alan Spatz, Gerald Batist, Wilson H Miller Jr, Sonia V Del Rincon, René P Zahedi, Christoph H Borchers | International Journal of Molecular Sciences | |||||
| Integrative analysis of non-small cell lung cancer patient-derived xenografts identifies distinct proteotypes associated with patient outcomes | Publication | 2022 | Shideh Mirhadi, Shirley Tam, Quan Li, Nadeem Moghal, Nhu-An Pham, Jiefei Tong, Brian J. Golbourn, Jonathan R. Krieger, Paul Taylor, Ming Li, Jessica Weiss, Sebastiao N. Martins-Filho ,Vibha Raghavan, Yasin Mamatjan, Aafaque A. Khan, Michael Cabanero, Shin | Nature Communications | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii | Publication | 2022 | Clara Navarrete, Benjamín J. Sánchez, Simonas Savickas, José Luis Martínez Ruiz | Department of Biotechnology and Biomedicine,Technical University of Denmark | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes | Publication | 2022 | Anna Maria Sole Giordano, Marco Luciani, Francesca Gatto, Monah Abou Alezz, Chiara Beghè, Lucrezia Della Volpe, Alessandro Migliara, Sara Valsoni, Marco Genua, Monika Dzieciatkowska, Giacomo Frati, Julie Tahraoui-Bories, Silvia Clara Giliani, Simona Orces | Journal of Experimental Medicine | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Chemical probing provides insight into the native assembly state of a bacterial microcompartment | Publication | 2022 | Daniel S. Trettel, William Resager, Beatrix M. Ueberheide, Conor C. Jenkins, Wade C.Winkler | University of Maryland, New York University Grossman School of Health, New York University Grossman School of Medicine | |||||
| APP and DYRK1A regulate axonal and synaptic vesicle protein networks and mediate Alzheimer’s pathology in trisomy 21 neurons | Publication | 2022 | Chun-I Wu, Elizabeth A. Vinton, Richard V. Pearse II, Keunjung Heo, Aimee J. Aylward, Yi-Chen Hsieh, Yan Bi, Sopefoluwa Adeleye, Seeley Fancher, Duc M. Duong, Nicholas T. Seyfried, Thomas L. Schwarz & Tracy L. Young-Pearse | Molecular Psychiatry | |||||
| Nano-LC: An updated review | Publication | 2022 | Lian Shan, Barry R Jones | LC-MS Biologics, QSquared Solutions | |||||
| Development of Fast Photochemical Oxidation of Proteins for in Vivo Modification in Caenorhabditis elegans | Case study | 2022 | Jessica Arlett Espino | University of Maryland | Thermo Orbitrap Fusion Lumos, Thermo Q Exactive HF | thermo-orbitrap-fusion-lumos thermo-q-exactive-hf | |||
| Protocol to characterize mitochondrial supercomplexes from mouse tissues by combining BN-PAGE and MS-based proteomics | Publication | 2021 | Roger Moreno-Justicia, Alba Gonzalez-Franquesa, Ben Stocks, Atul S. Deshmukh | Novo Nordisk Foundation (NNF), Copenhagen Denmark | Thermo Q Exactive HF-X | thermo-q-exactive-hf-x | |||
| Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity | Publication | 2022 | Jaione Auzmendi-Iriarte, Maddalen Otaegi-Ugartemendia, Estefania Carrasco-Garcia, Mikel Azkargorta, Antonio Diaz, Ander Saenz-Antonanzas, Joaquin Andrés Andermatten, Mikel Garcia-Puga, Idoia Garcia | University of the Basque Country | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Robust and high-throughput single cell proteomics with the Evosep One | Application note | 2022 | Evosep | Whisper 40 SPD | whisper-40spd | ||||
| Comprehensive proteomics with 8.000 proteins identified with DIA-PASEF using the 30 samples per day method | Application note | 2022 | Evosep | 30 SPD | 30-spd | ||||
| A semi automated AssayMAP bravo protocol for robust Evotip loading and high-throughput analysis on the Evosep One | Application note | 2022 | Evosep | ||||||
| Improve and enhance your proteome coverage with the performance column for our long methods | Application note | 2022 | Evosep | 30 SPD, Extended method | Bruker timsTOF Pro | 30-spd extended-method | bruker-timstof-pro | ||
| ASMS 2022 highlights: Robust and high-throughput analysis with ultra-high sensitivity | Webinar | 2022 | Dorte Bekker-Jensen, Angela Mc Ardle, Nicolai Bache | Evosep | |||||
| High sensitivity limited material proteomics empowered by data- independent acquisition on linear ion traps | Publication | 2022 | Teeradon Phlairaharn, Lukas R. Woltereck, Samuel Grégoire, Benjamin Furtwängler, Erwin M. Schoof | Technical University of Denmark | Whisper 20 SPD, Whisper 40 SPD | Thermo Orbitrap Eclipse Tribid | whisper-20spd whisper-40spd | thermo-orbitrap-eclipse-tribid | |
| Transcription factor-driven coordination of cell cycle exit and lineage-specification in vivo during granulocytic differentiation | Publication | 2022 | Kim Theilgaard-Mönch, Sachin Pundhir, Kristian Reckzeh, Jinyu Su, Marta Tapia, Benjamin Furtwängler, Johan Jendholm, Janus Schou Jakobsen, Marie Sigurd Hasemann, Kasper Jermiin Knudsen, Jack Bernard Cowland, Anna Fossum, Erwin Schoof | University of Copenhagen, Technical University of Denmark | Whisper 20 SPD | Thermo Orbitrap Eclipse Tribid | whisper-20spd | thermo-orbitrap-eclipse-tribid | |
| Using Targeted Liquid Chromatography-Tandem Mass Spectrometry to Rapidly Detect β-Lactam, Aminoglycoside, and Fluoroquinolone Resistance Mechanisms in Blood Cultures Growing E. coli or K. pneumoniae | Publication | 2022 | Dimard E. Foudraine, Lennard J. M. Dekker, Nikolaos Strepis, Stan J. Nispeling, Merel N. Raaphorst, Wendy Kloezen, Piet Colle, Annelies Verbon, Corné H. W. Klaassen, Theo M. Luider, Wil H. F. Goessens | Erasmus MC | 100 SPD | Thermo Orbitrap Fusion, Thermo Q Exactive | 100-spd | thermo-orbitrap-fusion thermo-q-exactive | |
| Profiling the Plasma Apolipoproteome of Normo- and Hyperlipidemic Mice by Targeted Mass Spectrometry | Publication | 2022 | Lasse Bach Steffensen, Jannik Larsen, Didde Riisager Hansen, Thi My Linh Tha, Niels Strømvig Larsen, Hans Christian Beck, Lars Melholt Rasmussen, Martin Overgaard | University of Southern Denmark (SDU), Odense | |||||
| Antimicrobial resistance with the Evosep One | Webinar | 2022 | Dimard Foudraine, Florence Roux Dalvai | Erasmus MC, Laval University | |||||
| Toxoplasma gondii ROP1 subverts murine and human innate immune restriction | Publication | 2022 | Simon Butterworth, Francesca Torelli, Eloise J. Lockyer, Jeanette Wagener, Ok-Ryul Song, Malgorzata Broncel, Matt R. G. Russell, Joanna C. Young, Moritz Treeck | The Francis Crick Institute, London. | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| A fast and sensitive absolute quantification assay for the detection of sars-cov-2 peptides using parallel reaction monitoring mass spectrometry | Publication | 2022 | Akshada Gajbhiye, Atakan Nalbant, Tiaan Heunis, Frances Sidgwick, Andrew Porter, Yusri Taha, Matthias Trost | Newcastle University | 200 SPD | Thermo Q Exactive HF | 200-spd | thermo-q-exactive-hf | |
| ABPP-HT* – Deep meets fast for activity-based profiling of deubiquitylating enzymes using advanced DIA and DDA mass spectrometry methods | Publication | 2022 | Hannah B. L. Jones, Raphael Heilig, Simon Davis, Roman Fischer, Benedikt M. Kessler, Adán Pinto-Fernandez | University of Oxford | 100 SPD | Bruker timsTOF Pro | 100-spd | bruker-timstof-pro | |
| Numb exon 9 inclusion regulates Integrinβ5 surface expression and promotes breast cancer metastasis | Publication | 2022 | Yangjing Zhang, Sascha E. Dho, Kamal Othman, Craig D. Simpson, Jessica Lapierre, Andrew Bondoc & C. Jane McGlade | Department of Medical Biophysics, University of Toronto., The Arthur and Sonia Labatt Brain Tumour Research Centre., SPARC BioCentre, The Hospital for Sick Children. | |||||
| Beta thalassemia minor is a beneficial determinant of red blood cell storage lesion | Publication | 2022 | Vassilis L. Tzounakas, Alkmini T. Anastasiadi, Davide Stefanoni, Francesca Cendali, Lorenzo Bertolone, Fabia Gamboni, Monika Dzieciatkowska, Pantelis Rousakis, Athina Vergaki, Vassilis Soulakis, Ourania E. Tsitsilonis, Konstantinos Stamoulis, Issidora S. | Department of Biology, Section of Cell Biology and Biophysics, School of Science, National and Kapodistrian University of Athens., Department of Biochemistry and Molecular Genetics, University of Colorado, School of Medicine-Anschutz Medical Campus. | Bruker timsTOF Pro | bruker-timstof-pro | |||
| High-Field Asymmetric Waveform Ion Mobility Spectrometry and Parallel Reaction Monitoring Increases Sensitivity for Clinical Biomarker Quantitation from FormalinFixed, Paraffin-Embedded Tumor Biopsies | Publication | 2022 | Steve Sweet, David Chain, Wen Yu, Philip Martin, Marlon Rebelatto, Andrew Chambers,1 Fabiola Cecchi, Yeoun Jin Kim | Translational Medicine, Oncology R&D, Data Science and AI, BioPharmaceuticals R&D, AstraZeneca, Gaithersburg, MD | Thermo Orbitrap Fusion Lumos | thermo-orbitrap-fusion-lumos | |||
| The setup and optimization of a complete global proteomics two-dimensional liquid chromatography system, using Spider Fractionation | Publication | 2021 | Eris Aas Bakketeig | University of Oslo, Oslo, Norway | Extended method | Thermo Q Exactive HF | extended-method | thermo-q-exactive-hf | |
| Doxycycline Alters the Porcine Renal Proteome and Degradome during Hypothermic Machine Perfusion | Publication | 2022 | Leonie van Leeuwen, Leonie H. Venema, Raphael Heilig, Henri G. D. Leuvenink, Benedikt M. Kessler | University of Groningen, Groningen, The Netherlands, Target Discovery Institute, University of Oxford, Oxford, UK, Chinese Academy of Medical Sciences Oxford Institute, University of Oxford, Oxford, UK | Bruker timsTOF Pro | bruker-timstof-pro | |||
| P018 Proteomic profile of serum and urine in newly diagnosed patients with Inflammatory Bowel Disease: new approach for biomarker discovery | Publication | 2022 | Montse Baldan Martin, Mikel Azkargorta Mujika, Lorena Ortega-Moreno | Hospital Universitario de La Princesa, CIC bioGune, Bilbao, Spain | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Recent Developments in Clinical Plasma Proteomics—Applied to Cardiovascular Research | Publication | 2022 | Nicolai Bjødstrup Palstrøm, Rune Matthiesen, Lars Melholt Rasmussen, Hans Christian Beck | Odense University Hospital, Odense, Denmark, Universidade NOVA de Lisboa, Lisbon, Portugal | |||||
| Proteomics based markers of clinical pain severity in juvenile idiopathic arthritis | Publication | 2022 | Hanne Van Der Heijden, Benoit Fatou, Kacie Hoyt, Benjamin Goodlett, Camilo Jaimes, Hanno Steen, Jaymin Upadhyay | Boston Children’s Hospital MA, USA, Maastricht University, Maastricht, The Netherlands, University of Amsterdam, Amsterdam, The Netherlands, BioSAS Consulting, Inc, Wellesley, MA, USA, McLean Hospital, Harvard Medical School, MA, Belmont, USA | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Structural mechanism for the selective phosphorylation of DNA-loaded MCM double hexamers by the Dbf4-dependent kinase | Publication | 2021 | Julia F. Greiwe, Thomas C. R. Miller, Julia Locke, Fabrizio Martino, Steven Howell, Anne Schreiber, Andrea Nans, John F. X. Diffley & Alessandro Costa | The Francis Crick Institute, London, UK | 30 SPD | Thermo Orbitrap Lumos | 30-spd | thermo-orbitrap-lumos | |
| FASN-dependent de novo lipogenesis is required for brain development | Publication | 2022 | Daniel Gonzalez-Bohorquez, Isabel M. Gallego López, Baptiste N. Jaeger, Sibylle Pfammatter, Megan Bowers, Clay F. Semenkovich & Sebastian Jessberger | University of Zurich, Switzerland. University School of Medicine, St. Louis, US | Extended method | Bruker timsTOF Pro | extended-method | bruker-timstof-pro | |
| Hyperinflammatory environment drives dysfunctional myeloid cell effector response to bacterial challenge in COVID-19 | Publication | 2022 | Srikanth Mairpady Shambat, Alejandro Gómez-Mejia, Tiziano A. Schweizer, Markus Huemer, Chun-Chi Chang, Claudio Acevedo, Judith Bergada-Pijuan, Clément Vulin, Daniel A. Hofmaenner, Thomas C. Scheier, Sanne Hertegonne, Elena Parietti, Nataliya Miroshnikova, | University Hospital of Zurich, University of Zurich, Switzerland | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Introducing Evotip Pure: A new generation of Evotip – It’s all in the tip | Webinar | 2022 | Nicolai Bache, Dorte Bekker-Jensen | Evosep | |||||
| Ultra-high sensitivity proteomics on the timsTOF SCP | Application note | 2021 | Nagarjuna Nagaraj, Thomas Kosinski, Amalia Apalategui Pierre-Olivier Schmit, Markus Lubeck, Oliver Raether & Gary Kruppa | Bruker, Germany. | Whisper 40 SPD | Bruker timsTOF SCP | whisper-40spd | bruker-timstof-scp | |
| The social architecture of an in-depth cellular protein interactome | Publication | 2021 | André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau & Matthias Mann | Max-Planck Institute of Biochemistry, Martinsried, Germany | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Data independent acquisition enables deep and fast label-free dynamic organellar mapping | Publication | 2021 | Julia P. Schessner, Vincent Albrecht, Alexandra K. Davies, Pavel Sinitcyn & Georg H.H. Borner | Max-Planck Institute of Biochemistry, Martinsried, Germany | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Fully Automated High-Throughput Host Cell Protein Analysis of Highly Diverse Samples | Application note | 2021 | Anders Giessing | 200 SPD | Bruker timsTOF | 200-spd | bruker-timstof | ||
| Evotip Pure: A new generation of Evotip | Brochure | 2022 | Evosep | ||||||
| Unleash the power of DIA | Webinar | 2022 | Patricia Skowronek, Yves Le Blanc, Ihor Batruch | Max Planck Institute of Biochemistry, Sciex | |||||
| Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation | Publication | 2020 | Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B. Horning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Oliver Raether, Melvin A. Park, Sabrina Richter, David S. Fischer, Fabian J. Th | Max Planck Institute of Biochemistry, Martinsried, Germany. Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark. Evosep Biosystems, Denmark. Bruker Daltonik, Germany and United States. Helmholtz Zentrum München, Germany. | Whisper 40 SPD | Bruker timsTOF Pro, Bruker timsTOF SCP | Download publication or learn more on our website | whisper-40spd | bruker-timstof-pro bruker-timstof-scp |
| Proteomics at the single cell level with Evosep Whisper and the timsTOF SCP | Application note | 2022 | Bruker Daltonics | Whisper 40 SPD | Bruker timsTOF Pro | whisper-40spd | bruker-timstof-pro | ||
| Evosep One in the clinical biochemistry lab | Webinar | 2022 | Nicolai Jacob Wewer Albrechtsen, Martin Overgaard | Odense University Hospital, University of Southern Denmark, NNF center for protein research, University of Copenhagen | |||||
| A beginner’s guide to Evosep | Webinar | 2022 | Nicolai Bache & Ireshyn Govender | Evosep, Resyn Biosciences | |||||
| Whisper is here | Webinar | 2021 | Christoph Krisp & Angela Kruse | Bruker, Vanderbilt University | |||||
| FFPE Tissue Analysis on the Evosep One | Webinar | 2021 | Bernhard Kuster & Lisa Schweizer | Technical University of Munich, Max Planck Institute of Biochemistry | |||||
| Automated sample prep workflows | Webinar | 2021 | Philipp E. Geyer & Dorte Bekker-Jensen | Omicera Diagnostics, Evosep | |||||
| Development of a Standardized Microflow LC Gradient to Enable Sensitive and Long-Term Detection of Synthetic Anabolic-Androgenic Steroids for High-Throughput Doping Controls | Publication | 2021 | Vivian Delcourt, Patrice Garcia, Isabelle Pottier, Nasrine Mansoibou, Nicolai Bache, Yohan Glavieux, Benjamin Chabot, Isabelle Perot, Isabelle Perot, François André, Benoit Loup, Agnès Barnabé, Marie-Agnès Popot & Ludovic Bailly-Chouriberry | GIE-LCH, Laboratoire Des Courses Hippiques, France. Evosep. | High Organic Method | Thermo Q Exactive HF | high-organic-method | thermo-q-exactive-hf | |
| Plasma extracellular vesicles in people living with HIV and type 2 diabetes are related to microbial translocation and cardiovascular risk | Publication | 2021 | Beate Vestad, Tuula A. Nyman, Malene Hove‑Skovsgaard, Maria Stensland, Hedda Hoel, Anne‑Marie Siebke Trøseid, Trude Aspelin, Hans Christian D. Aass, Maija Puhka, Johannes R. Hov, Susanne Dam Nielsen, Reidun Øvstebø & Marius Trøseid | Oslo University Hospital Rikshospitalet, Oslo, Norway. University of Oslo, Oslo, Norway. Norwegian Society for Extracellular Vesicles, Oslo, Norway. University Hospital of Copenhagen Rigshospitalet, Copenhagen, Denmark. Lovisenberg Diaconal Hospital, Oslo | 30 SPD | Thermo Q Exactive HF | 30-spd | thermo-q-exactive-hf | |
| DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii | Publication | 2021 | Clara Navarrete, Benjamín J. Sánchez, Simonas Savickas, José L. Martínez | Technical University of Denmark. Denmark. | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Evaluation of Disposable Trap Column nanoLC–FAIMS–MS/MS for the Proteomic Analysis of FFPE Tissue | Publication | 2021 | Stephan Eckert, Yun-Chien Chang, Florian P. Bayer, Matthew The, Peer-Hendrik Kuhn, Wilko Weichert & Bernhard Kuster | Technical University of Munich, Munich, Germany. | 30 SPD, 60 SPD, Extended method | Thermo Orbitrap Exploris 480 | 30-spd 60-spd extended-method | thermo-orbitrap-exploris-480 | |
| High-Throughput Drug Discovery with the Evosep One | Webinar | 2021 | Casimir Bamberger & Tanveer S. Batth | Scripps Research Institute & Novo Nordisk Foundation Center for Protein Research | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Targeted Workflows with Evosep One | Webinar | 2021 | Michael Maccoss & Vivian Delcourt | University of Washington & Laboratoire Des Courses Hippiques | High Organic Method | high-organic-method | |||
| Plasma Proteomics with the Evosep One | Webinar | 2021 | Roman Fischer & Lili Niu | University of Oxford & Novo Nordisk Foundation Center for Protein Research | 30 SPD | Bruker timsTOF Pro, Thermo Orbitrap Exploris 480 | 30-spd | bruker-timstof-pro thermo-orbitrap-exploris-480 | |
| Discovery Proteomics for COVID-19: Where We Are Now | Publication | 2021 | Angela McArdle, Kirstin E. Washington, Blandine Chazarin Orgel, Aleksandra Binek, Danica-Mae Manalo, Alejandro Rivas, Matthew Ayres, Rakhi Pandey, Connor Phebus, Koen Raedschelders, Justyna Fert-Bober & Jennifer E Van Eyk | Cedars-Sinai Medical Center, Los Angeles, California, United States | |||||
| AlphaTims: Indexing trapped ion mobility spectrometry – time of flight data for fast and easy accession and visualization | Publication | 2021 | Sander Willems, Eugenia Voytik, Patricia Skowronek, Maximilian T. Strauss & Matthias Mann | Max Planck Institute of Biochemistry, Martinsried, Germany. OmicEra Diagnostics GmbH, Planegg, Germany. University of Copenhagen, Copenhagen, Denmark | 200 SPD, 60 SPD | Bruker timsTOF Pro | 200-spd 60-spd | bruker-timstof-pro | |
| Deep neural network for detecting arbitrary precision peptide features through attention based segmentation | Publication | 2021 | Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan & Ming Li | University of Waterloo, Waterloo, Canada. Bioinformatics Solutions Inc., Waterloo, Canada. | |||||
| A deeper look at carrier proteome effects for single-cell proteomics | Publication | 2021 | Zilu Ye, Tanveer Batth, Patrick L. Rüther, Jesper V. Olsen | University of Copenhagen | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Time evolution of PEG-shedding and serum protein coronation determines the cell uptake kinetics and delivery of lipid nanoparticle formulated mRNA | Publication | 2021 | A. Gallud, M. J. Munson, K. Liu, A. Idström, H. M. G. Barriga, S. R. Tabaei, N. Aliakbarinodehi, M. Ojansivu, Q. Lubart, J. J. Doutch, M. N. Holme, L. Evenäs, L. Lindfors, M. M. Stevens, A. Collén, A. Sabirsh, F. Höök, E. K. Esbjörner. | Chalmers University of Technology, Gothenburg, Sweden. AstraZeneca, Gothenburg, Sweden. Karolinska Institute, Stockholm, Sweden. Rutherford Appleton Laboratory, Didcot, UK. Imperial College London, UK. | 30 SPD | Thermo Q Exactive HF | 30-spd | thermo-q-exactive-hf | |
| PD-L1 Overexpression, SWI/SNF Complex Deregulation, and Profound Transcriptomic Changes Characterize Cancer-Dependent Exhaustion of Persistently Activated CD4+ T Cells | Publication | 2021 | Iga Jancewicz, Joanna Szarkowska, Ryszard Konopinski, Malgorzata Stachowiak, Monika Swiatek, Katarzyna Blachnio, Szymon Kubala, Paulina Oksinska, Pawel Cwiek, Natalia Rusetska, Agnieszka Tupalska, Natalia Zeber-Lubecka, Ewa Grabowska, Bianka Swiderska, | Maria Sklodowska-Curie National Research Institute of Oncology, Warsaw, Poland. Polish Academy of Sciences, 02-106 Warsaw, Poland. University Hospital Basel and University of Basel, 4001 Basel, Switzerland. Centre of Postgraduate Medical Education, 01-8 | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| A universal peptide matrix interactomics approach to disclose motif dependent protein binding | Publication | 2021 | Evelyn Ramberger, Lorena Suarez-Artiles, Daniel Perez-Hernandez, Mohamad Haji, Oliver Popp, Ulf Reimer, Achim Leutz, Gunnar Dittmar & Philipp Mertins | Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany. Luxembourg Institute of Health, Luxembourg. JPT Peptide Technologies GmbH, Berlin, Germany. Humboldt University of Berlin, Berlin, Germany. University of Luxembourg | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | |
| Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study | Publication | 2021 | IMPACC Manuscript Writing Team | IMPACC | Bruker timsTOF Pro | bruker-timstof-pro | |||
| AlphaPept, a modern and open framework for MS-based proteomics | Publication | 2021 | Maximilian T. Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems & Matthias Mann | Max Planck Institute of Biochemistry, Martinsried, Germany. University of Copenhagen, Denmark. Nvidia Corporation, Santa Clara, CA, USA. OmicEra Diagnostics GmbH, Planegg, Germany. Jena University Hospital, Jena, Germany. | 200 SPD | Bruker timsTOF Pro | 200-spd | bruker-timstof-pro | |
| A personalized mass spectrometry-based assay to monitor M-protein in multiple myeloma patients (EasyM) | Publication | 2021 | Mariya Liyasova, Zac McDonald, Paul Taylor, Kathleen Gorospe, Xin Xu, Chenyu Yao, Qixin Liu, Liqiang Yang, Eshetu G. Atenafu, Giovanni Piza, Bin Ma, Donna Reece, Suzanne Trudel | Rapid Novor, Canada. University of Waterloo, Canada. Princess Margaret Cancer Centre, Canada. | 30 SPD, 60 SPD | Thermo Orbitrap Fusion, Thermo Q Exactive | 30-spd 60-spd | thermo-orbitrap-fusion thermo-q-exactive | |
| Exploitation of the Secretory Pathway by SARS-CoV-2 Envelope | Publication | 2021 | Guy J Pearson, Malgorzata Broncel, Ambrosius P Snijders & Jeremy G Carlton | King’s College London, UK. The Francis Crick Institute, UK. | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| Mass Spectrometry Provides a Highly Sensitive Noninvasive Means of Sequencing and Tracking M-Protein in the Blood of Multiple Myeloma Patients | Publication | 2021 | Zac McDonald, Paul Taylor, Mariya Liyasova, Qixin Liu & Bin Ma | Rapid Novor, Canada | 30 SPD | Thermo Q Exactive | 30-spd | thermo-q-exactive | |
| Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass | Publication | 2021 | Dimard E. Foudrainehttps, Nikolaos Strepisa, Corné H. W. Klaassenhttps, Merel N. Raaphorsta, Annelies Verbona, Theo M. Luiderb, Wil H. F. Goessensa & Lennard J. M. | Erasmus MC University Medical Center, Rotterdam, The Netherlands | 100 SPD | Thermo Q Exactive HF | 100-spd | thermo-q-exactive-hf | |
| Synthetic Antigen Presenting cells reveal the diversity and functional specialisation of extracellular vesicles composing the fourth signal of T cell immunological synapses | Publication | 2021 | Pablo F. Céspedes, Ashwin Jainarayanan, Lola Fernández-Messina, Salvatore Valvo, David G. Saliba, Audun Kvalvaag, Elke Kurz, Huw Colin-York, Marco Fritzsche, Yanchun Peng, Tao Dong, Jesús A. Siller-Farfán, Omer Dushek, Michal Maj, Erdinc Sezgin, Ben Peaco | The University of Oxford, Oxford, UK. Universidad Autónoma de Madrid, Madrid, Spain. Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain. Karolinska Institutet, Stockholm, Sweden. MediCity, Nottingham, UK. | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| A blood atlas of COVID-19 defines hallmarks of disease severity and specificity | Publication | 2021 | COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium, Julian C Knight. | University of Oxford | 100 SPD | Bruker timsTOF Pro | 100-spd | bruker-timstof-pro | |
| An ultrasensitive method for analysis of viral spike N-glycoforms | Publication | 2021 | Sabyasachi Baboo, Jolene K Diedrich, Salvador Martínez-Bartolomé, Xiaoning Wang, Torben Schiffner, Bettina Groschel, William R Schief, James C Paulson & John R Yates III | Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA. The Scripps Research Institute, La Jolla, CA, USA. | 30 SPD, Extended method | Bruker timsTOF Pro | 30-spd extended-method | bruker-timstof-pro | |
| Proteomics of resistance to Notch1 inhibition in acute lymphoblastic leukemia reveals targetable kinase signatures | Publication | 2021 | Giulia Franciosa, Jos G. A. Smits, Sonia Minuzzo, Ana Martinez-Val, Stefano Indraccolo & Jesper V. Olsen | University of Padova, Padova, Italy. University of Copenhagen, Denmark. | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells | Publication | 2021 | YoungJun Ju, Yaacov Ben-David, Daniela Rotin & Eldad Zacksenhaus | University Health Network, Toronto, Canada. Chinese Academic of Sciences, Guiyang, China. Guizhou Medical University, Guiyang, China. The Hospital for Sick Children, Toronto, Canada. | Thermo Orbitrap Fusion Lumos | thermo-orbitrap-fusion-lumos | |||
| A fleet of Evosep One instruments supports a proteomics factory at Rapid Novor | Case study | 2021 | Evosep. Rapid Novor | Evosep. Rapid Novor | |||||
| High Sensitivity Evotips | Brochure | 2021 | Evosep | Evosep | |||||
| Unleashing the power of DIA combined with short gradients using Evosep One | Webinar | 2021 | Florian Meier & Vadim Demchev | Friedrich Shiller University, Jena, Germany. Francis Crick Institute, UK. | 100 SPD, 200 SPD, 60 SPD | Bruker timsTOF Pro | 100-spd 200-spd 60-spd | bruker-timstof-pro | |
| Unleashing the true power of DIA/SWATH data acquisition with short gradients – Rapid profiling of pre-clinical models and proteome dynamics | Application note | 2019 | Evosep | ||||||
| Improve and enhance your proteome coverage with the Performance column | Application note | 2019 | Evosep | 100 SPD, 60 SPD | 100-spd 60-spd | ||||
| Evosep One: A Separation Tool Designed for Clinical Omics | Brochure | 2019 | Evosep | ||||||
| Co-translational assembly and localized translation of nucleoporins in nuclear pore complex biogenesis | Publication | 2021 | Ophélie Lautier, Arianna Penzo, Jérôme Rouvière, Guillaume Chevreux, Louis Collet, Isabelle Loïodice, Angela Taddei, Frédéric Devaux, Martine A. Collart & Benoit Palancade | Université de Paris, Paris, France. Sorbonne Université, Paris, France. University of Geneva, Geneva, Switzerland. | 30 SPD | 30-spd | |||
| Hemorrhage and saline resuscitation are associated with epigenetic and proteomic reprogramming in the rat lung | Publication | 2021 | Alexander Bonde, Trine G. Eskesen, Jacob Steinmetz, Erwin M. Schoof, Lene H.D. Blicher, Lars S. Rasmussen & Martin Sillesen | Rigshospitalet, University of Copenhagen, Denmark. Technical University of Denmark, Lyngby, Denmark. | 30 SPD | Thermo Orbitrap Fusion | 30-spd | thermo-orbitrap-fusion | |
| Standardized workflow for precise mid- and high-throughput proteomics of blood biofluids | Webinar | 2021 | Angela Mc Ardle, Aleksandra Binek, Annie Moradian, Blandine Chazarin Orgel, Alejandro Rivas, Kirstin E. Washington, Conor Phebus, Danica-Mae Manalo, James Go, Vidya Venkatraman, Casey Johnson, Qin Fu, Susan Cheng, Koen Raedschelders, Justyna-Fert Bober, S | Cedars-Sinai Medical Center, Los Angeles, CA, United States. University College Dublin, Dublin, Ireland. | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Malaria Parasite Schizont Egress Antigen-1 Plays an Essential Role in Nuclear Segregation during Schizogony | Publication | 2021 | Abigail J. Perrin, Claudine Bisson, Peter A. Faull, Matthew J. Renshaw, Rebecca A. Lees, Roland A. Fleck, Helen R. Saibil, Ambrosius P. Snijders, David A. Baker & Michael J. Blackman | The Francis Crick Institute, London, UK. University of London, London, UK. King’s College London, London, UK. London School of Hygiene & Tropical Medicine, London, UK | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | |
| The COVIDome Explorer Researcher Portal | Publication | 2021 | Kelly D. Sullivan, Matthew D. Galbraith, Kohl T. Kinning, Kyle Bartsch, Nik Levinsky, Paula Araya, Keith P. Smith, Ross E. Granrath, Jessica R. Shaw, Ryan Baxter, Kimberly R. Jordan, Seth Russell, Monika Dzieciatkowska, Julie A. Reisz, Fabia Gamboni, Fran | University of Colorado, CO, USA. University of Colorado Anschutz Medical Campus, Aurora, CO, USA. Colorado School of Public Health, Aurora, CO, USA. | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| High sensitivity dia-PASEF proteomics with DIA-NN and FragPipe | Publication | 2021 | Vadim Demichev, Fengchao Yu, Guo Ci Teo, Lukasz Szyrwiel, George A. Rosenberger, Jens Decker, Stephanie Kaspar-Schoenefeld, Kathryn S. Lilley, Michael Mülleder, Alexey I. Nesvizhskii & Markus Ralser | The Francis Crick Institute, London, UK. Charité – Universitätsmedizin Berlin, Germany. University of Cambridge, UK. University of Michigan, Ann Arbor, USA. Columbia University, New York, USA. Bruker Daltonics, Bremen, Germany | 100 SPD, 200 SPD, 60 SPD | Bruker timsTOF Pro | Download publication or learn more on our website | 100-spd 200-spd 60-spd | bruker-timstof-pro |
| A robust mass spectrometer for precision medicine – the Orbitrap Exploris 240 mass spectrometer for large-scale plasma protein profiling | Application note | 2021 | Michelle L Dubuke, Sitara Chauhan, Sarah Trusiak & Emily I. Chen | Thermo Fisher Scientific, United States | 60 SPD | Thermo Orbitrap Exploris 240 | 60-spd | thermo-orbitrap-exploris-240 | |
| Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers | Publication | 2021 | Christoph H Mayr, Lukas M Simon, Gabriela Leuschner, Meshal Ansari, Janine Schniering, Philipp E Geyer, Ilias Angelidis, Maximilian Strunz, Pawandeep Singh, Nikolaus Kneidinger, Frank Reichenberger, Edith Silbernagel, Stephan Böhm, Heiko Adler, Michael Li | Helmholtz Zentrum München, Munich, Germany. Ludwig‐Maximilians University (LMU) Munich, Munich, Germany. University Hospital Zurich, Zurich, Switzerland. Max Planck Institute of Biochemistry, Martinsried, Germany. Asklepios Fachkliniken Munich‐Gauting, Mu | 100 SPD, 60 SPD | Thermo Q Exactive HF | 100-spd 60-spd | thermo-q-exactive-hf | |
| Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease | Publication | 2021 | Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M Allan, Alessandra Granata, Sanjay Sinha, Tao Wang, Hugh S Markus, Alexandra Naba, Roman Fischer, Tom Van Agtmael, Karen Horsburgh & M. Zameel Cader | University of Oxford, UK. University of Edinburgh, UK. University of Glasgow. UK. University of Manchester, UK. Manchester Academic Health Science Centre, UK. Cambridge Biomedical Campus, Hills Road, UK. University of Illinois at Chicago, USA. | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| Evotips: Quick guide | Brochure | 2022 | Evosep | ||||||
| Rapid, robust and reproducible host-cell protein analysis with Evosep One | Webinar | 2021 | Jiao Ma & Anders Giessing | AstraZeneca, Novozymes | 200 SPD, 60 SPD | Bruker timsTOF Pro, Thermo Orbitrap Fusion Lumos | 200-spd 60-spd | bruker-timstof-pro thermo-orbitrap-fusion-lumos | |
| Covid-19 research with Evosep One | Webinar | 2021 | Angela McArdle & Mathias Trost | Cedars Sinai, Newcastle University | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| A beginner’s guide to Evosep | Webinar | 2021 | Nicolai Bache, Alexey Chernobrovkin & Raja Nirojogi | Evosep, Pelago Bioscience, University of Dundee | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Whisper is coming | Webinar | 2021 | Evosep | Whisper 40 SPD | whisper-40spd | ||||
| EVOSEP+ | Webinar | 2020 | Evosep | Extended method | extended-method | ||||
| Powerful pairing of technologies and analytical approaches | Webinar | 2019 | Thomas Angel | GlaxoSmithKline | |||||
| Whisper™ step-by-step guide | Brochure | 2021 | Evosep | Whisper 40 SPD | whisper-40spd | ||||
| SPIN – Species by Proteome Investigation | Publication | 2021 | Patrick L. Rüther, Immanuel M. Husic, Pernille Bangsgaard, Kristian M. Gregersen, Pernille Pantmann, Milena Carvalho, RitaM. Godinho, Lukas Friedl, Joao Cascalheira, Marie Louise S. Jørkov, Michael Benedetti, Jonathan Haws, Nuno Bicho, Frido Welker, Enric | University of Copenhagen, Denmark. University of Algarve, Portugal. University of Louisville, USA. University of North Carolina, USA. University of West Bohemia, Czech Republic. University of New Mexico, Albuquerque, USA. Museum Nordsjælland, Denmark. Roy | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | |
| High-resolution longitudinal serum proteome trajectories in COVID-19 reveal patients-specific seroconversion | Publication | 2021 | Philipp E. Geyer, Florian M. Arend, Sophia Doll, Marie-Luise Louiset, Sebastian Virreira Winter, Johannes B. Müller-Reif, Furkan M. Torun, Michael Weigand, Peter Eichhorn, Mathias Bruegel, Maximilian T. Strauss, Lesca M. Holdt, Matthias Mann & Daniel Teup | OmicEra Diagnostics GmbH, Germany. University Hospital, LMU Munich, Germany. University of Copenhagen, Denmark. | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | |
| The Host Interactome of Spike Expands the Tropism of SARS-CoV-2 | Publication | 2021 | Casimir Bamberger, Sandra Pankow, Salvador Martínez-Bartolomé, Jolene Diedrich, Robin Park & John Yates III | Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Molecular origin of blood-based infrared fingerprints | Publication | 2021 | Liudmila Voronina, Cristina Leonardo, Johannes B. Mueller-Reif, Philipp E. Geyer, Marinus Huber, Michael Trubetskov, Kosmas V. Kepesidis, Jürgen Behr, Matthias Mann, Ferenc Krausz & Mihaela Žigman | Department of Physics, Ludwig Maximilian University of Munich, Germany. Max Planck Institute of Quantum Optics, Garching, Germany. Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry,Germany. Novo Nordisk Foundation Cent | Thermo Q Exactive HF-X | thermo-q-exactive-hf-x | |||
| R1441G but not G201S Mutation Enhances LRRK2 Mediated Rab10 phosporylation in human Peripheral blood neutrophils | Publication | 2021 | Ying Fan, Raja S. Nirujogi, Alicia Garrido, Javier Ruiz Martínez, Alberto Bergareche-Yarza, Elisabet Mondragón Rezola, Ana Vinagre Aragón, Ioana Croitoru, Ana Gorostidi Pagola, Laura Paternain Markinez, Roy Alcalay, Richard A. Hickman, Jonas Duering, Neri | University of Dundee, UK. Hospital Clínic de Barcelona, Spain. Universitat de Barcelona, Spain. Biodonostia Health Research Institute, Spain. Columbia University Medical Center, New York, USA. The Michael J Fox Foundation for Parkinson's Research, New Yor | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | |
| Spatial-proteomics reveal in-vivo phospho-signaling dynamics at subcellular resolution | Publication | 2021 | Ana Martinez-Val, Dorte B. Bekker-Jensen, Sophia Steigerwald, Adi Mehta, Trung Tran, Krzysztof Sikorski, Estefanía Torres-Vega, Ewa Kwasniewicz, Sólveig Hlín Brynjólfsdóttir, Lisa B. Frankel, Rasmus Kjøbsted, Nicolai Krogh, Alicia Lundby, Simon Bekker-Jen | University of Copenhagen, Denmark. Oslo University Hospital, Norway. | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | |
| Basement membrane stiffness determines metastases formation | Publication | 2021 | Raphael Reuten, Sina Zendehroud, Monica Nicolau, Lutz Fleischhauer, Anu Laitala, Stefanie Kiderlen, Denise Nikodemus, Lena Wullkopf, Sebastian Rune Nielsen, Sarah McNeilly, Carina Prein, Maria Rafaeva, Erwin M. Schoof, Benjamin Furtwängler, Bo T. Porse, H | University of Copenhagen, Denmark. Freie Universität Berlin, Germany. Munich University of Applied Sciences, Germany. Center for Nanoscience-CeNS, Germany. University of Glasgow, UK. Technical University of Denmark, Denmark. KU Leuven, Belgium. Queen Mary | 30 SPD | Thermo Orbitrap Exploris 480 | 30-spd | thermo-orbitrap-exploris-480 | |
| Crystal structure of bacterial cytotoxic necrotizing factor CNFY reveals molecular building blocks for intoxication | Publication | 2021 | Paweena Chaoprasid, Peer Lukat, Sabrina Mühlen, Thomas Heidler, Emerich‐Mihai Gazdag, Shuangshuang Dong, Wenjie Bi, Christian Rüter, Marco Kirchenwitz, Anika Steffen, Lothar Jänsch, Theresia E B Stradal, Petra Dersch & Wulf Blankenfeldt | University of Münster, Germany. Helmholtz Centre for Infection Research, Germany. Deutsches Zentrum für Infektionsforschung, Germany. Technische Universität Braunschweig, Germany. | Bruker timsTOF Pro | bruker-timstof-pro | |||
| Interactions of Viral Proteins from Pathogenic and Low or Non-Pathogenic Orthohantaviruses with Human Type I Interferon Signaling | Publication | 2021 | Giulia Gallo, Grégory Caignard, Karine Badonnel, Guillaume Chevreux, Samuel Terrier, Agnieszka Szemiel, Gleyder Roman-Sosa, Florian Binder, Quan Gu, Ana Da Silva Filipe, Rainer G. Ulrich, Alain Kohl, Damien Vitour, Noël Tordo & Myriam Ermonval | Institut Pasteur, France. Ecole Doctorale Complexité du Vivant, France. UMR 1161 Virologie, France. BREED, INRAE, Université Paris-Saclay, France. Université de Paris, France. MRC-University of Glasgow Centre for Virus Research, UK. Institute of Novel and | 30 SPD | Thermo Orbitrap Fusion | 30-spd | thermo-orbitrap-fusion | |
| Fluvastatin mitigates SARS-CoV-2 infection in human lung cells | Publication | 2020 | Francisco J. Zapatero-Belinchón, Rebecca Moeller, Lisa Lasswitz, Marco van Ham, Miriam Becker, Graham Brogden, Ebba Rosendal, Wenjie Bi, Belén Carriquí, Koushikul Islam, Annasara Lenman, Antonia P. Gunesch, Jared Kirui, Thomas Pietschmann, Anna K Överby, | Medical School Hannover, Germany. Helmholtz Centre for Infection Research, Germany. University of Veterinary Medicine Hannover, Germany. Umeå University, Sweden. German Centre for Infection Research (DZIF), Germany. | Extended method | Bruker timsTOF Pro | extended-method | bruker-timstof-pro | |
| ABPP-HT – high-throughput activity-based profiling of deubiquitylating enzyme inhibitors in a cellular context | Publication | 2020 | Hannah Jones, Raphael Heilig, Roman Fischer, Benedikt M Kessler & Adan Pinto-Fernandez | University of Oxford, United Kingdom. | 100 SPD | Bruker timsTOF Pro | 100-spd | bruker-timstof-pro | |
| Seroconversion stages COVID19 into distinct pathophysiological states | Publication | 2020 | Matthew D. Galbraith, Kohl T. Kinning, Kelly D. Sullivan, Ryan Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P. Smith, Ross E. Granrath, Jessica Shaw, Monika Dzieciatkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. H | University of Colorado, United States. | 30 SPD | Bruker timsTOF Pro | 30-spd | bruker-timstof-pro | |
| Deciphering the LRRK code: LRRK1 and LRRK2 phosphorylate distinct Rab proteins and are regulated by diverse mechanisms | Publication | 2020 | Asad U. Malik, Athanasios Karapetsas, Raja S. Nirujogi, Sebastian Mathea, Prosenjit Pal, Pawel Lis, Matthew Taylor, Elena Purlyte, Robert Gourlay, Mark Dorward, Simone Weidlich, Rachel Toth, Nicole K. Polinski, Stefan Knapp, Francesca Tonelli & Dario R Al | University of Dundee, United Kingdom. Johann Wolfgang Goethe University, Germany. Michael J Fox Foundation for Parkinson’s Research, United States. | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | |
| Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sites | Publication | 2020 | Raja S Nirujogi, Francesca Tonelli, Matthew Taylor, Pawel Lis, Alexander Zimprich, Esther Sammler & Dario R Alessi | University of Dundee, United States. Medical University of Vienna, Austria. | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 30-spd 60-spd | thermo-orbitrap-exploris-480 | |
| diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition | Publication | 2020 | Florian Meier, Andreas-David Brunner, Max Frank, Annie Ha, Isabell Bludau, Eugenia Voytik, Stephanie Kaspar-Schoenefeld, Markus Lubeck, Oliver Raether, Nicolai Bache, Ruedi Aebersold, Ben C. Collins, Hannes L. Röst & Matthias Mann | Max Planck Institute of Biochemistry, Martinsried, Germany. Bruker Daltonik, Germany. ETH Zürich, Switzerland. University of Belfast, United Kingdom. University of Toronto, Canada. | 100 SPD, 200 SPD, 60 SPD | Bruker timsTOF Pro | Download publication or learn more on our website | 100-spd 200-spd 60-spd | bruker-timstof-pro |
| High throughput proteome and phosphorpoteome sample processing coupled to fast gradient DIA | Publication | 2020 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | ||
| Peptidomic analysis of urine from youths with early type 1 diabetes reveals novel bioactivity of uromodulin peptides in vitro | Publication | 2019 | SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | ||
| Tech note: Evosep One: A gradient off-set focusing HPLC instrument for robust and high throughput proteomics | 2017 | ||||||||
| Evosep One Field Test at the Max-Planck Institute of Biochemistry | Application note | 2017 | |||||||
| Gradient off-set focusing HPLC insturment for robust and high throughput clinical proteomics | Application note | 2017 | |||||||
| Sample loading protocol for Evotips | Application note | 2022 | |||||||
| Introducing the Evosep One – Instrument Overview | Video | 2017 | |||||||
| Optimizing data processing parameters for samples acquired on instruments using Advanced Peak Determination | Poster | 2018 | Thermo Fisher Scientific, United States | 100 SPD | Thermo Q Exactive HF-X | 100-spd | thermo-q-exactive-hf-x | ||
| New Orbitrap Exploris 480 Mass Spectrometer Coupled with Evosep One | Brochure | 2020 | Thermo Fisher Scientific, United States | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | ||
| Development of a robust and reprodusible method for detection of citrullination in complex samples | Poster | 2018 | University of Southern Denmark, Denmark | 60 SPD | Thermo Orbitrap Fusion Lumos | 60-spd | thermo-orbitrap-fusion-lumos | ||
| A tale of two tails – efficient profiling of protein degraders by specific functional and target engagement readouts | Publication | 2020 | Pelago Biosciences, Sweden | Thermo Q Exactive HF-X | thermo-q-exactive-hf-x | ||||
| How to get Speed and Depth in yout Host Cell Protein | Video | 2018 | Bruker Daltonics, Germany | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | ||
| A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-Robust Proteomics | Publication | 2018 | Max Planck Institute of Biochemistry, Martinsried Germany and Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | ||
| Online parallel accumulation – serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer | Publication | 2018 | Max Planck Institute of Biochemistry, Martinsried and Bruker Daltonics, Germany | 200 SPD | Bruker timsTOF Pro | 200-spd | bruker-timstof-pro | ||
| Robust and Reprodusible Protein Quantification in Plasma Using the Evosep One and the Agilent 6495 Triple Quadrupole LC/MS | Application note | 2020 | Agilent Technologies, United States | 60 SPD | Agilent 6495 Triple Quadrupole | 60-spd | agilent-6495-triple-quadrupole | ||
| High dynamic range proteome analysis with BoxCar DIA and super-resolution Orbitrap mass spectrometry | Poster | 2020 | Max Planck Institute of Biochemistry, Martinsried, Germany | 100 SPD, 30 SPD | Thermo Orbitrap Exploris 480 | 100-spd 30-spd | thermo-orbitrap-exploris-480 | ||
| Clinical proteomics | Poster | 2018 | Max Planck Institute of Biochemistry, Martinsried, Germany | Thermo | thermo | ||||
| Development of a Novel LC Concept for Clinical Proteomics | Poster | 2018 | Max Planck Institute of Biochemistry, Martinsried and Bruker Daltonics, Germany | 60 SPD | Thermo | 60-spd | thermo | ||
| Increasing proteome coverage using cysteine-specific DIA Mass spectrometry – Cys-DIA | Publication | 2020 | University of Southern Denmark | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | ||
| A network of RNA-binding proteins controls translation efficiency to activate anaerobic metabolism | Publication | 2020 | SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada | 60 SPD | Thermo Orbitrap Fusion Lumos | 60-spd | thermo-orbitrap-fusion-lumos | ||
| Improving proteome coverage and peptide identification rates in short LC gradients | Video | 2020 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | ||
| High-throughput proteomics with Evosep One | Video | 2020 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | ||
| Rapid proteome analyses using the Evosep One | Video | 2018 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 60 SPD | Thermo Q Exactive HF | 60-spd | thermo-q-exactive-hf | ||
| Targeted assay development for quantifying protein half-life over a range of mouse tissues | Video | 2019 | Glaxo Smith Kline, Unites States | 300 SPD | 300-spd | ||||
| Sensitive, Rapid, Robust and Reproducible Workflow for Host Cell Protein Profiling in Biopharmaceutical Process Development | Publication | 2020 | Glaxo Smith Kline, Unites States | 30 SPD, 60 SPD | Thermo Orbitrap Fusion Lumos | 30-spd 60-spd | thermo-orbitrap-fusion-lumos | ||
| Using Artificial Intelligence on Ultrafast LC-MSMS-DIA runs for Bacterial Identification in Urine | Video | 2019 | CHU Québec Université Laval Research Center, Canada | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | ||
| Characterization of glutathione proteome in CHO cells and its relationship with productivity and cholesterol synthesis | Publication | 2020 | Technical University of Denmark | 30 SPD | Thermo Q Exactive HF-X | 30-spd | thermo-q-exactive-hf-x | ||
| High-throughput 4D-Proteomics – Application of dia-PASEF® and the Evosep One for short gradients | Application note | 2020 | Bruker Daltonics, Germany | 100 SPD, 200 SPD, 300 SPD, 60 SPD | Bruker timsTOF Pro | 100-spd 200-spd 300-spd 60-spd | bruker-timstof-pro | ||
| MaxQuant software for ion moiblity enhanced shotgun proteomics | Publication | 2020 | Bruker Daltonics, Germany | 100 SPD | Bruker timsTOF Pro | 100-spd | bruker-timstof-pro | ||
| Plasma proteomics goes high-throughput – timsTOF Pro with PASEF and 4D feature alignment to quantify 500 plasma proteins in 11.5 min | Application note | 2019 | Bruker Daltonics, Germany | 100 SPD | Bruker timsTOF Pro | 100-spd | bruker-timstof-pro | ||
| Fast and reproducible phosphoproteomics using MagReSyn® Amine and Tim-IMAC HP magnetic beads and the Evosep One | Application note | 2020 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 60 SPD | Thermo Orbitrap Exploris 480 | 60-spd | thermo-orbitrap-exploris-480 | ||
| Consistency, consistency – Automated Sample Prep for Translational Proteomics | Video | 2020 | Thermo Fisher Scientific, United States | 60 SPD | Thermo | 60-spd | thermo | ||
| An Ultra High-Throughput Plasma Protein Profiling (uHTPPP) Workflow Using a Modified Quadrupole-Orbitrap Mass Spectrometer | Application note | 2020 | Thermo Fisher Scientific, United States | 30 SPD, 60 SPD | Thermo Orbitrap Exploris 240 | 30-spd 60-spd | thermo-orbitrap-exploris-240 | ||
| Scalable and Automated Plasma Workflow Based on the Thermo Scientific Q Exactive HF-X MS Platform | Application note | 2019 | Thermo Fisher Scientific, United States | 100 SPD, 30 SPD, 60 SPD | Thermo Q Exactive HF-X | 100-spd 30-spd 60-spd | thermo-q-exactive-hf-x | ||
| Advancing Interactomics Workflows with 4D-Proteomics on the timsTOF Pro | Video | 2020 | Max Planck Institute of Biochemistry, Martinsried, Germany | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | ||
| Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites | Publication | 2019 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 60 SPD | Thermo Q Exactive HF-X | 60-spd | thermo-q-exactive-hf-x | ||
| timsTOF Pro with PASEF and Evosep One: Maximizing throughput, robustness and analytical depth for shotgun proteomics | Application note | 2018 | Bruker Daltonics, Germany | 100 SPD, 200 SPD, 60 SPD | Bruker timsTOF Pro | 100-spd 200-spd 60-spd | bruker-timstof-pro | ||
| Evidence of Structural Protein Damage and Membrane Lipid Remodeling in Red Blood Cells from COVID-19 Patients | Publication | 2020 | University of Colorado, United States | Bruker timsTOF Pro | bruker-timstof-pro | ||||
| Development of mass spectrometry-based targeted assay for direct detection of novel SARS-CoV-2 coronavirus from clinical specimens | Publication | 2020 | Mayo Clinic Rochester, United States | 100 SPD, 200 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd | thermo-orbitrap-exploris-480 | ||
| Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV | Publication | 2020 | Max Planck Institute of Biochemistry, Martinsried, Germany | 30 SPD, 60 SPD | Thermo Q Exactive HF-X | 30-spd 60-spd | thermo-q-exactive-hf-x | ||
| Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level | Publication | 2020 | University of Colorado, US | Bruker timsTOF Pro | bruker-timstof-pro | ||||
| A paired liver biopsy and plasma proteomics study reveals circulating biomarkers for alcohol-related liver disease | Publication | 2020 | Max Planck Institute of Biochemistry, Martinsried, Germany and Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 30 SPD | Thermo Q Exactive HF-X | 30-spd | thermo-q-exactive-hf-x | ||
| Evosep One Enables Robust Deep Proteome Coverage Using Tandem Mass Tags While Significantly Reducing Instrument Time | Video | 2019 | SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada | 30 SPD, 60 SPD | Thermo Orbitrap Fusion Lumos | 30-spd 60-spd | thermo-orbitrap-fusion-lumos | ||
| Increasing Throughput: From Pre-Clinical Models To Protein Complexes | Video | 2019 | ETH Zürich, Switzerland | 60 SPD | SCIEX | 60-spd | sciex | ||
| In-Depth Characterization of Staurosporine Induced Proteome Thermal Stability Changes | Publication | 2020 | Pelago Biosciences, Sweden | Thermo Q Exactive HF | thermo-q-exactive-hf | ||||
| Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles | Publication | 2020 | University of Southern Denmark | 60 SPD | Thermo Orbitrap Fusion Lumos | 60-spd | thermo-orbitrap-fusion-lumos | ||
| A Compact Quadrupole-Orbitrap Mass Spectrometer With Faims Interface Improves Proteome Coverage In Short Lc Gradients | Publication | 2020 | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark | 100 SPD, 200 SPD, 60 SPD | Thermo Orbitrap Exploris 480 | 100-spd 200-spd 60-spd | thermo-orbitrap-exploris-480 | ||
| Covalent Protein Painting Reveals Structural Changes In The Proteome In Alzheimer Disease | Publication | 2020 | Scripps Research Institute, United States | 30 SPD | Thermo Orbitrap Fusion Lumos | 30-spd | thermo-orbitrap-fusion-lumos | ||
| Advanced Host Cell Protein (Hcp) Analysis With Tims Qtof Ms Powers Biopharmaceutical Development | Publication | 2019 | Bruker Daltonics, Germany | 60 SPD | Bruker timsTOF Pro | 60-spd | bruker-timstof-pro | ||
| Accurate Detection Of The Four Most Prevalent Carbapenemases In E. Coli And K. Pneumoniae By High-Resolution Mass Spectrometry | Publication | 2019 | Erasmus MC, The Netherlands | 100 SPD | Thermo Q Exactive HF | 100-spd | thermo-q-exactive-hf | ||
| Study: Increased De Novo Protein Sequencing Coverage With Optimal Protease Cocktail | Poster | 2019 | Rapid Novor, Canada | Thermo Orbitrap Fusion | thermo-orbitrap-fusion | ||||
| High-Throughput Proteomics Quantification Enabled by Fast LC Separation and Advanced PRM Acquisition | Poster | 2018 | Thermo Fisher Scientific, United States | 100 SPD, 200 SPD, 60 SPD | Thermo Q Exactive HF-X | 100-spd 200-spd 60-spd | thermo-q-exactive-hf-x | ||
| Fast Confirmatory Analysis of Rhuepos in Plasma for Horseracing Doping Control | Application note | 2019 | Le Laboratoire des Courses Hippiques (LCH), France | 100 SPD | Thermo Q Exactive HF | 100-spd | thermo-q-exactive-hf |
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