LITERATURE ROOM

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Here you can find the latest publications from our users and collaboration partners and also discover older publications. Use the search function to explore our Literature Room or get inspiration from the tags and categories.

TitleMaterialYearAuthorsOrganizationEvosep methodMS instrumentationLearn Morehf:tax:evosep_methodhf:tax:ms_vendor
Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF2024Charlotte Adams, Wassim Gabriel, Kris Laukens, Mario Picciani, Mathias Wilhelm, Wout Bittremieux, Kurt BoonenDepartment of Computer Science, University of Antwerp, Antwerp, Belgium

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Proximity labeling proteomics reveals Kv1.3 potassium channel immune interactors in microglia2024Christine A. Bowen, Hai M. Nguyen, Young Lin, Pritha Bagchi, Aditya Natu, Claudia Espinosa-Garcia, Erica Werner, Prateek Kumar, Brendan R. Tobin, Levi Wood, Victor Faundez, Heike Wulff, Nicholas T. Seyfried, Srikant RangarajuCenter for Neurodegenerative Diseases, Emory University, Atlanta, GA, USA,

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Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition2024Amelia C. Peterson, Florian Harking, Ole Østergaard, Rasmus Rydbirk, Susana Aznar, Hamish Stewart, Yue Xuan, Daniel Hermanson, Stevan Horning, Christian Hock, Alexander Makarov, Vlad Zabrouskov & Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark,

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30-spdthermo-orbitrap-astral thermo-orbitrap-exploris-480
Refining Spatial Proteomics by Mass Spectrometry: An Efficient Workflow Tailored for Archival Tissue2024Rune Daucke, Charlotte V. Rift, Nicolai S. Bager, Kartikey Saxena, Peter R. Koffeldt, Jakob Woessmann, Valdemaras Petrosius, Eric Santoni-Rugiu, Bjarne W. kristensen, Pia Klausen & Erwin M. SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark

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Homo sapiens reached the higher latitudes of Europe by 45,000 years ago2024Michael Hein, Sahra Talamo, Lukas Wacker, Harald Meller, Holger Dietl, Jörg Orschiedt, Jesper V. Olsen, Hugo Zeberg, Kay Prüfer, Johannes Krause, Matthias Meyer, Frido Welker, Shannon P. McPherron, Tim Schüler & Jean-Jacques HublinMax Planck Institute for Evolutionary Anthropology, Leipzig, Germany

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The Gárdos Channel and Piezo1 Revisited: Comparison between Reticulocytes and Mature Red Blood Cells2024Min Qiao, Carmen Van der Zwaan, Maria Giustina Rotordam,Thomas John, Laura Hertz, Arjan J. Hoogendijk, Nadine Becker, Christian Wagner, Marieke Von Lindern, Stephane Egee, Emile Van den Akker and Lars KaestnerTheoretical Medicine and Biosciences, Campus University Hospital, Saarland University, Homburg, Germany

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Activity-Guided Proteomic Profiling of Proteasomes Uncovers a Variety of Active (And Inactive) Proteasome Species2024Manisha Priyadarsini Sahoo, Tali Lavy, Noam Cohen, Indrajit Sahu & Oded KleifeldFaculty of Biology, Technion-Israel Institute of Technology, Technion City, Haifa, Israel,

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thermo-orbitrap-exploris-480 thermo-q-exactive-hf
The loss of the PDIM/PGL virulence lipids causes differential secretion of ESX-1 sub-strates in Mycobacterium marinum2024Bradley S. Jones, Daniel D. Hu, Kathleen R. Nicholson, Rachel M. Cronin, Matthew M. Champion and Patricia A. ChampionDepartment of Biological Sciences, Eck Institute for Global Health, Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, United States

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15-spdtimstof-pro
Implementation of pupylation-based proximity labelling in plant biology reveals regulatory factors in cellulose biosynthesis2024Shuai Zheng, Ouda Khammy, Lise Charlotte Marie Noack, Andreas De Meyer, Ghazanfar Abbas Khan, Nancy De Winne, Dominique Eeckhout, Daniel van Damme, Staffan PerssonCopenhagen Plant Science Center, Department of Plant & Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark

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A macroevolution-inspired approach to reveal novel antibiotic resistance mechanisms2024Luiz Pedro de Carvalho, Fernanda Subtil, Teresa Machado, Holly Douglas, Joanna Kirkpatrick, Mark Skehel & Acely Garza-GarciaThe Herbert Wertheim UF Scripps Institute, FL, United States

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Differential expression of haptoglobin in individuals at clinical high risk of psychosis and its association with global functioning and clinical symptoms2024Kieran Wynne, Carrie E. Bearden, Scott W. Woods, Barbara Cornblatt, Daniel Mathalon, William Stone, Tyrone D. Cannon, Jean Addington, Kristin S. Cadenhead, Diana Perkins, Clark Jeffries, David CotterDepartment of Psychiatry, Royal College of Surgeons in Ireland, Dublin, Ireland

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timstof-pro
Increased Cholesterol Synthesis Drives Neurotoxicity in Patient Stem Cell-Derived Model of Multiple Sclerosis2024Cory M. Willis, Luca Peruzzotti-Jametti, Valentina Fossati, Frank Edenhofer, Tommaso Leonardi, Christian Frezza, Irina Mohorianu, Angelo D’Alessandro, and Stefano PluchinoDepartment of Clinical Neurosciences and NIHR Biomedical Research Centre, University of Cambridge, Cambridge, UK

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timstof-pro
Proteomic Biomarkers for the Prediction of Transition to Psychosis in Individuals at Clinical High Risk: A Multi-cohort Model Development Study2024Carrie E Bearden, Kristin S Cadenhead, Jean Addington, Elaine F Walker, Tyrone D Cannon, Mary Cannon, Pat McGorry, Paul Amminger, Gerard Cagney, Barnaby Nelson, Clark Jeffries, Diana Perkins, David R CotterDepartment of Psychiatry, Royal College of Surgeons in Ireland, University of Medicine and Health Sciences, Dublin, Ireland

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timstof-pro
Plasma Proteomic Analysis Based on 4D-DIA Evaluates the Clinical Response to Imrecoxib in the Early Treatment of Osteoarthritis2024López-Gómez J, Villareal L, Andrés M, Ponte I, Xicoy B, Zamora L, Vilaseca M, Roque ABiochemistry and Molecular Biology Department, Biosciences Faculty. Universitat Autònoma de Barcelona, Spain,

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Mechanism of chaperone coordination during cotranslational protein folding in bacteria2024Alžběta Roeselová, Sarah L. Maslen, Santosh Shivakumaraswamy, Grant A. Pellowe, Steven Howell, Dhira Joshi, Joanna Redmond, Svend Kjaer, J. Mark Skehel and David BalchinProtein Biogenesis Laboratory, The Francis Crick Institute, London, UK

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The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients2024Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R. Ferrone, Lei Zheng, Jason H. Moore, Warren Tourtellotte, Jennifer E. Van Eyk & Dan TheodorescuSamuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA

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Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications2024Claudia Ctortecka, Natalie M. Clark, Brian Boyle, Anjali Seth, D. R. Mani, Namrata D. Udeshi & Steven A. CarrBroad Institute of MIT and Harvard, Cambridge, MA, USA

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The CDK Pho85 inhibits Whi7 Start repressor to promote cell cycle entry in budding yeast2024Cristina Ros-Carrero, Mihai Spiridon-Bodi, J Carlos Igual and Mercè Gomar-AlbaInstitut de Biotecnologia i Biomedicina (BIOTECMED) and Departament de Bioquímica i Biologia Molecula rUniversitat de València, Burjassot Spain

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Characterization of MdpS: an in-depth analysis of a MUC5B-degrading protease from Streptococcus oralis2024Fredrik Leo, Rolf Lood, Kristina A. Thomsson, Jonas Nilsson, Gunnel Svensäter, Claes WickströmDepartment of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, Sweden

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The loss of the PDIM/PGL virulence lipids causes differential secretion of ESX-1 substrates in Mycobacterium marinum2024Bradley S. Jones, Daniel D. Hu, Kathleen R. Nicholson, Rachel M. Cronin, Matthew M. Champion, and Patricia A. ChampionDepartment of Biological Sciences, Eck Institute for Global Health, Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana

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15-spdtimstof-pro
Proteomics of colorectal tumors identifies the role of CAVIN1 in tumor formation and progression2024Jesper Olsen, Ana Martinez-Val, Leander van der Hoeven, Dorte Bekker-Jensen, Margarita Jørgensen, Jesper Nors, Giulia Franciosa, Claus Andersen, Jesper BramsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark

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timsTOF HT Improves Protein Identification and Quantitative Reproducibility for Deep Unbiased Plasma Protein Biomarker Discovery2024Chinmay Belthangady, John Blume, Jessica K. Chan, Guillermo Flores-Campuzano, Yuntao Hu, Manway Liu, Mark A. Marispini, Megan G. Mora, Saividya Ramaswamy, Purva Ranjan, Preston B. Williams, Robert J. X. Zawada, Philip Ma, and Bruce E. WilcoxPrognomiQ Inc., San Mateo, California, United States, , ,

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Kinase inhibitor pulldown assay (KiP) for clinical proteomics2024Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USALester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA

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Cerebrospinal fluid shotgun proteomics identifies distinct proteomic patterns in cerebral amyloid angiopathy rodent models and human patients2024Marc Vervuurt, Joseph M. Schrader, Anna M. de Kort, Iris Kersten, Hans J. C. T. Wessels, Catharina J. M. Klijn, Floris H. B. M. Schreuder, H. Bea Kuiperij, Jolein Gloerich, William E. Van Nostrand & Marcel M. VerbeekDepartment of Neurology, Donders Institute for Brain, Cognition and Behaviour, 830 TML, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands

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Full Mass Range ΦSDM Orbitrap Mass Spectrometry for DIA Proteome Analysis2024Sophia Steigerwald, Ankit Sinha, Kyle L. Fort, Wen-Feng Zeng, Lili Niu, Christoph Wichmann, Arne Kreutzmann, Daniel Mourad, Konstantin Aizikov, Dmitry Grinfeld, Alexander Makarov, Matthias Mann, Florian MeierDepartment Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany, ,

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Multi-omics profiling with untargeted proteomics for blood-based early detection of lung cancer2024Madhuvanthi Ramaiah, Saividya Ramaswamy, Purva Ranjan, Guanhua Shu, Peter Spiro, Benjamin Ta, Dijana Vitko, Jacob Waiss, Zachary Yanagihara, Robert Zawada, Jimmy Yi Zeng, Susan Zhang, James Yee, John E. Blume, Chinmay Belthangady, Bruce Wilcox, Philip MaPrognomiQ, Inc., San Mateo, CA, USA

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Next-Generation Proteomics of Brain Extracellular Vesicles in Schizophrenia Provide New Clues on the Altered Molecular Connectome2024Cristina Lorca, María Fernández-Rhodes, Jose Antonio Sánchez Milán, María Mulet, Félix Elortza, Alfredo Ramos-Miguel, Luis F. Callado, J. Javier Meana, Maria Mur, Iolanda Batalla, Elisabet Vilella, Aida Serra and Xavier Gallart-PalauBiomedical Research Institute of Lleida Dr. Pifarré Foundation (IRBLLEIDA), Neuroscience Area, +Pec Proteomics Research Group (+PPRG), University Hospital Arnau de Vilanova,Lleida, Spain

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Localization, traffic and function of Rab34 in adipocyte lipid and endocrine functions2024Andrés Trávez, Carmen Tercero-Alcázar, Alejandro Correa-Sáez, María Jesús González-Rellán, Oriol A. Rangel-Zúñiga, Amaia Rodríguez, Antonio Membrives, Gema Frühbeck, Rubén Nogueiras, Marco A. Calzado, Rocío Guzmán-Ruiz & María M. MalagónDepartment of Cell Biology, Physiology, and Immunology, Maimonides Institute for Biomedical Research of Córdoba (IMIBIC), University of Córdoba (UCO), Reina Sofía University Hospital (HURS), Córdoba, Spain

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FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy2024Vera A. van der Weijden, Maximilian Stötzel, Dhanur P. Iyer, Beatrix Fauler, Elzbieta Gralinska, Mohammed Shahraz, David Meierhofer, Martin Vingron, Steffen Rulands, Theodore Alexandrov, Thorsten Mielke & Aydan Bulut-KarsliogluStem Cell Chromatin Group, Department of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany

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Direct translation of incoming retroviral genomes2024Julia Köppke, Luise-Elektra Keller, Michelle Stuck, Nicolas D. Arnow, Norbert Bannert, Joerg Doellinger & Oya CingözRobert Koch Institute, Department of Infectious Diseases, Unit of Sexually Transmitted Bacterial Pathogens and HIV, Berlin, Germany

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Single cell proteomics by mass spectrometry reveals deep epigenetic insight and new targets of a class specific histone deacetylase inhibitor2024Benjamin C. OrsburnThe Department of Pharmacology and Molecular Sciences, the Johns Hopkins University School of Medicine, Baltimore, MD, USA, , , , ,

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Calcium carbonate polymorph selection in fish otoliths: A key role of phosphorylation of Starmaker-like protein2024Marta Kalka, Klaudia Bielak, Maciej Ptak, Jarosław Stolarski, Piotr Dobryszycki, Magdalena WojtasWroclaw University of Science and Technology, Faculty of Chemistry, Department of Biochemistry, Molecular Biology and Biotechnology, Wrocław, Poland

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Trauma Induces Intravascular Hemolysis, Exacerbated by RBC Transfusion and Associated with Disrupted Arginine-Nitric Oxide Metabolism2024Ernest E. Moore, Angela Sauaia, Monika Dzieciatkowska, William Hallas, Otto Thielen, Margot DeBot, Alexis Cralley, Ian LaCroix, Christopher Erickson, Sanchayita Mitra, Anirban Banerjee, Kenneth Jones, and Kirk C. HansenUniversity of Colorado Denver, School of Medicine, Department of Biochemistry and Molecular Genetics, Aurora, CO

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timstof-pro
Paracrine cross-talk between human adipose tissue-derived endothelial cells and perivascular cells accelerates the endothelialization of an electrospun ionomeric polyurethane scaffold2023Jeremy A. Antonyshyn, Kate D. MacQuarrie, Meghan J. McFadden, Anthony O. Gramolini, Stefan O.P. Hofer, J. Paul SanterreInstitute of Biomedical Engineering, University of Toronto, Toronto, Canada

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Region-Directed Enzyme Immobilization through Engineering Protein Surface with Histidine Clusters2023Nicoll Zeballos, Natalia Comino, Daniel Andrés-Sanz, Javier Santiago-Arcos, Mikel Azkargorta, Felix Elortza, Eleftheria Diamanti, and Fernando López-GallegoCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), San Sebastián, Spain

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timstof-pro
Modeling the simultaneous dynamics of proteins in blood plasma and the cerebrospinal fluid in human in vivo2023Pierre Giroux, Jérôme Vialaret, Jana Kindermans, Audrey Gabelle, Luc Bauchet, Christophe Hirtz, Sylvain Lehmann, Jacques ColingeUniversité de Montpellier, Montpellier, France

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Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimen2023Alexander M. Bernhardt, Lisa Schweizer, Vincent Albrecht, Daniel Teupser, Axel Imhof, Bernhard Kuster, Stefan F. Lichtenthaler, Matthias Mann, Jürgen Cox, and Stefanie M. HauckMetabolomics and Proteomics Core (MPC), Helmholtz Zentrum München,German Research Center for Environmental Health (GmbH), Munich, Germany, , , ,

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Serine-129 phosphorylation of α-synuclein is an activity-dependent trigger for physiologic protein-protein interactions and synaptic function2023Lina Wang, Dube Dheeraj Prakashchand, Nicholas P. Boyer, Veronica M. Saia-Cereda, Kristen Branes-Guerrero, Donald P. Pizzo, Pritha Bagchi, V.S. Sundar, Yong Tang, Utpal Das, David A. Scott, Padmini Rangaman, Yuki Ogawa, Subhojit RoyDepartment of Pathology, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA

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In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response2023Erica Stevenson, Yiwen R. Chen, Nabora S. Reyes, Tien Peng, Michael A. Matthay, Michela Traglia, Alexander R. Pico, Daniel F. Jarosz, Abigail Buchwalter, Sina Ghaemmaghami, Danielle L. Swaney, Isha H. JainInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA

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A biotin targeting chimera (BioTAC) system to map small molecule interactomes in situ2023Andrew J. Tao, Jiewei Jiang, Gillian E. Gadbois, Pavitra Goyal, Bridget T. Boyle, Elizabeth J. Mumby, Samuel A. Myers, Justin G. English & Fleur M. FergusonDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA

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Comparative proteomic analysis of human milk fat globules and paired membranes and mouse milk fat globules identifies core cellular systems contributing to mammary lipid trafficking and secretion2023Jayne F. Martin Carli, Monika Dzieciatkowska, Teri L. Hernandez, Jenifer Monks, James L. McManamanDivision of Reproductive Sciences, Department of Obstetrics and Gynecology, University of Colorado Anschutz Medical Campus, Aurora, CO, United States

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Cryopreservation of highly extended pig spermatozoa remodels its proteome and counteracts polyspermic fertilization in vitro2023Inmaculada Parrilla, Josep M. Cambra, Cristina Cuello, Heriberto Rodriguez-Martinez, Maria A. Gil, Emilio A. MartinezDepartment of Medicine and Animal Surgery, International Excellence Campus for Higher Education and Research “Campus Mare Nostrum,”, University of Murcia, Murcia, Spain

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60-spdbruker-timstof-flex
Proteomic comparison between non‐purified cerebrospinal fluid and cerebrospinal fluid‐derived extracellular vesicles from patients with Alzheimer’s, Parkinson’s and Lewy body dementia2023Yael Hirschberg, Natalia Valle‐Tamayo, Oriol Dols‐Icardo, Sebastiaan Engelborghs, Bart Buelens, Roosmarijn E. Vandenbroucke, Yannick Vermeiren, Kurt Boonen, and Inge MertensHealth Unit, Flemish Institute for Technological Research (VITO), Mol Belgium

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30-spdbruker-timstof-pro
Fully automated workflow for integrated sample digestion and Evotip loading enabling high-throughput clinical proteomics2023Anders H. Kverneland, Florian Harking, Joel Mario Vej-Nielsen, Magnus Huusfeldt, Dorte B. Bekker-Jensen, Inge Marie Svane, Nicolai Bache, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark, ,

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Immunopeptidomics in the Era of Single-Cell Proteomics2023Rupert L. Mayer and Karl MechtlerResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria, , ,

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IMBAS-MS discovers organ-specific HLA peptide patterns in plasma2023Maria Wahle, Marvin Thielert, Maximilian Zwiebel, Patricia Skowronek, Wen-Feng Zeng, Matthias MannDepartment Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany, , ,

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An automated and fast sample preparation workflow for laser microdissection guided ultrasensitive proteomics2023Anuar Makhmut, Di Qin, David Hartlmayr, Anjali Seth, Fabian CosciaMax-Delbrück-Center for Molecular Medicine in the Helmholtz Association, Spatial Proteomics Group, Berlin, Germany

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INPP5D regulates inflammasome activation in human microglia2023Nancy Ashour, Mariko Taga, Gizem Terzioglu, Masashi Fujita, Seeley B. Fancher, Alina Sigalov, Courtney R. Benoit, Hyo Lee, Matti Lam, Nicholas T. Seyfried, David A. Bennett, Philip L. De Jager, Vilas Menon & Tracy L. Young-PearseAnn Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA

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Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens2023Stephan Eckert, Stephan A. Müller, Stephan Breimann, Pieter Giesbertz, Alexander M. Bernhardt, Lisa Schweizer, Vincent Albrecht, Daniel Teupser, Axel Imhof, Bernhard Kuster, Stefan F. Lichtenthaler, Matthias Mann, Jürgen Cox, and Stefanie M. HauckMetabolomics and Proteomics Core (MPC), Helmholtz Zentrum München,German Research Center for Environmental Health (GmbH), Munich, Germany,

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Novel Assay for Quantification of Free Light Chain (FLC) Dimers in Serum of Patients with Plasma Cell Dyscrasias2023Mariya Liyasova PhD, Michael Slade MDMSCI, Julie Fortier PhD, Ravi Vij MD MBA, Mark Fiala PhD, Liqiang Yang PhD, Bin Ma PhDRapid Novor Inc., Kitchener, Canada

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thermo-orbitrap-exploris-480
Diagnostic Utility of Proteogenomic Analysis for Inherited Bone Marrow Failure Syndrome2023Manabu Wakamatsu MDPhD, Hideki Muramatsu MD PhD, Hironori Sato MDPhD, Masaki Ishikawa, Daisuke Nakajima, Ryo Konno, Yusuke Kawashima, Motoharu Hamada MDPhD, Yusuke Okuno MD PhD, Osamu Ohara, Yoshiyuki Takahashi MD PhDDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan

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thermo-orbitrap-exploris-480
High-throughput proteomics uncovers exercise training and type 2 diabetes–induced changes in human white adipose tissue2023Jeppe Kjærgaard Larsen, Rikke Kruse, Navid Sahebkhtiari, Roger Moreno-Justicia, Gerard Gomez Jorba, Maria H. Petersen, Martin E. De Almeida, Niels Ørtenblkad, Atul S. Deshmukh, Kurt HøjlundSteno Diabetes Center Odense, Odense University Hospital, Odense C, Denmark

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High-throughput and scalable single cell proteomics identifies over 5000 proteins per cell2023Zilu Ye, Pierre Sabatier, Leander van der Hoeven, Teeradon Phlairaharn, David Hartlmayr, Fabiana Izaguirre, Anjali Seth, Hiren J. Joshi, Dorte B. Bekker-Jensen, Nicolai Bache, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark,

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BioE3 identifies specific substrates of ubiquitin E3 ligases2023Orhi Barroso-Gomila, Laura Merino-Cacho, Veronica Muratore, Coralia Perez, Vincenzo Taibi, Elena Maspero, Mikel Azkargorta, Ibon Iloro, Fredrik Trulsson, Alfred C. O. Vertegaal, Ugo Mayor, Felix Elortza, Simona Polo, Rosa Barrio & James D. SutherlandCenter for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Derio, Spain

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30-spdtimstof-pro
Sensitive Blood-Based Detection of HIV-1 and Mycobacterium tuberculosis Peptides for Disease Diagnosis by Immuno-Affinity Liquid Chromatography–Tandem Mass Spectrometry: A Method Development and Proof-of-Concept Study2023Lin Li, Christopher J Lyon, Sylvia M LaCourse, Wenshu Zheng, Joshua Stern, Jaclyn N Escudero, Wilfred Bundi Murithi, Lilian Njagi, Grace John-Stewart, Thomas R Hawn, Videlis Nduba, Wael Abdelgaliel, Thomas Tombler, David Horne, Li Jiang, Tony Y HuCenter for Cellular and Molecular Diagnostics, Department of Biochemistry and Molecular Biology, School of Medicine, Tulane University, New Orleans, LA, United States

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Mapping cardiac remodeling in chronic kidney disease2023Giulia Franciosa, Aurelien Dugourd, Julio Saez-Rodriguez, Sabine Neuss, Michael Lehrke, Peter Boor, Claudia Goettesch, Jesper V. Olsen, Thimoteus Speer, Tzong-Shi Lu, Kennth Lim, Jürgen Floege, Laura Denby, Ivan Costa, Rafael KramannClinic for Renal and Hypertensive Disorders, Rheumatological and Immunological Disease, University Hospital of the RWTH Aachen, Aachen, Germany

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30-spdthermo-orbitrap-exploris-480
Systematic optimization of automated phosphopeptide enrichment for high-sensitivity phosphoproteomics2023Patricia Bortel, Ilaria Piga, Claire Koenig, Christopher Gerner, Ana Martinez del Val, Jesper V. OlsenDepartment of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Austria

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Deep topographic proteomics of a human brain tumour2023Simon Davis, Connor Scott, Janina Oetjen, Philip D. Charles, Benedikt M. Kessler, Olaf Ansorge & Roman FischerTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford

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Loss of the KN Motif and AnKyrin Repeat Domain 1 (KANK1) Leads to Lymphoid Compartment Dysregulation in Murine Model2023Marwa Almosailleakh, Sofia Bentivegna, Samuele Narcisi, Sébasitien J. Benquet, Linn Gillberg, Carmen P. Montaño-Almendras, Simonas Savickas, Erwin M. Schoof, Amelie Wegener, Hérve Luche, Henrik E. Jensen, Christophe Côme & Kirsten GrønbækDepartment of Hematology, Rigshospitalet, 2100 Copenhagen, Denmark

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Instrumentation at the leading edge of proteomics2023Trenton M. Peters-Clarke, Joshua J. Coon, Nicholas M. RileyDepartment of Chemistry, University of Washington, Seattle, WA, USA

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The social and structural architecture of the yeast protein interactome2023André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau & Matthias MannMax-Planck Institute of Biochemistry, Martinsried, Germany

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Antitumor activity of AZD0754, a dnTGFβRII-armored, STEAP2-targeted CAR-T cell therapy, in prostate cancer2023Philip L. Martin, Clare E. Hoover, Kenesha Riley, Steve M. Sweet, David Chain, Yeoun Jin Kim, Eric Tu, Nathalie Harder, Sandrina Phipps, Melissa Damschroder, Ryan N. Gilbreth, Mark Cobbold, Gordon Moody, and Emily E. BoscoEarly Oncology Research, Biologics Engineering and Oncology Translational Medicine, Oncology R&D, AstraZeneca, Gaithersburg, Maryland, USA

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Sensitive and Specific Global Cell Surface N-Glycoproteomics Shows Profound Differences Between Glycosylation Sites and Subcellular Components2023Noortje de Haan, Ming Song, Oliver C. Grant, Zilu Ye, Fawzi Khoder Agha, Mikkel Koed Møller Aasted, Robert J. Woods, Sergey Y. Vakhrushev, and Hans H. WandallCopenhagen Center for Glycomics, University of Copenhagen, Copenhagen, Denmark

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30-spdthermo-orbitrap-exploris-480
Dynamic extracellular proximal interaction profiling reveals Low-Density Lipoprotein Receptor as a new Epidermal Growth Factor signaling pathway component2023Rasha Al Mismar, Payman Samavarchi-Tehrani, Brendon Seale, Vesal Kasmaeifar, Claire E. Martin, Anne-Claude GingrasLunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Sinai Health, Toronto, Canada,

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30-spd 60-spdtimstof-pro-2
Synaptic involvement of the human amygdala in Parkinson’s disease2023Sandra Villar-Conde, Veronica Astillero-Lopez, Melania Gonzalez-Rodriguez, Daniel Saiz-Sanchez, Alino Martinez-Marcos, Isabel Ubeda-Banon, Alicia Flores-CuadradoNeuroplasticity and Neurodegeneration Group, CRIB, Faculty of Medicine of Ciudad Real, University of Castilla-La Mancha (UCLM), Spain

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Mass spectrometry quantifies target engagement for a KRASG12C inhibitor in FFPE tumor tissue2023Andrew G. Chambers, David C. Chain, Steve M. Sweet, Zifeng Song, Philip L. Martin, Matthew J. Ellis, Claire Rooney and Yeoun Jin KimEarly Oncology, AstraZeneca, One MedImmune Way, Gaithersburg, MD 20878, USA

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30-spdthermo-orbitrap-fusion-lumos
Comparing extraction method efficiency for high-throughput palaeoproteomic bone species identification2023Florian S. Harking, Alberto J. Taurozzi, Zandra Fagernäs, Ricardo M. Godinho, Geoff M. Smith, Marcel Weiss, Tim Schüler, Shannon P. McPherron, Harald Meller, João Cascalheira, Nuno Bicho, Jesper V. Olsen, Jean-Jacques Hublin & Frido WelkerGlobe Institute, University of Copenhagen, Copenhagen, Denmark

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60-spdthermo-orbitrap-exploris-480
Interplay between Cultured Human Osteoblastic and Skeletal Muscle Cells: Effects of Conditioned Media on Glucose and Fatty Acid Metabolism2023Ngoc Nguyen Lunde, Nimo Mukhtar Mohamud Osoble, Andrea Dalmao Fernandez, Alfreda S. Antobreh, Abbas Jafari, Sachin Singh, Tuula A. Nyman, Arild C. Rustan, Rigmor Solberg and G. Hege ThoresenSection for Pharmacology and Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway

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Ventricular CSF proteomic profiles and predictors of surgical treatment outcome in chronic hydrocephalus2023Nina Rostgaard, Markus Harboe Olsen, Sara Diana Lolansen, Nicolas Hernandez Nørager, Peter Plomgaard, Nanna MacAulay & Marianne JuhlerDepartment of Neurosurgery, The Neuroscience Centre, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark

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A chemoproteomic platform for selective deubiquitinase inhibitor discovery2023Rosa Cookson, Aini Vuorinen, Jonathan Pettinger, Cassandra R. Kennedy, Joanna M. Kirkpatrick, Rachel E. Peltier-Heap, Andrew Powell, Ambrosius P. Snijders, Mark Skehel, David House, Katrin Rittinger, and Jacob T. BushCrick-GSK Biomedical LinkLabs, GSK, Gunnels Wood Road, Stevenage, Hertfordshire, UK,

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30-spd 60-spdthermo-orbitrap-fusion-lumos
Species-specific metabolic reprogramming in human and mouse microglia during inflammatory pathway induction2023Alejandro Marmolejo-Garza, Marina Trombetta-Lima, Asmaa Oun, Jasmijn Hunneman, Tingting Chen, Jari Koistinaho, Sarka Lehtonen, Arjan Kortholt, Justina C. Wolters, Barbara M. Bakker, Bart J. L. Eggen, Erik Boddeke & Amalia DolgaDepartment of Molecular Pharmacology, Faculty of Science and Engineering, Groningen Research Institute of Pharmacy, Behavioral and Cognitive Neurosciences (BCN), University of Groningen, Groningen, The Netherlands

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Identification of Plasma Biomarkers from Rheumatoid Arthritis Patients Using an Optimized Sequential Window Acquisition of All THeoretical Mass Spectra (SWATH) Proteomics Workflow2023Liang Jin, Fei Wang, Xue Wang, Bohdan P. Harvey, Yingtao Bi, Chenqi Hu, Baoliang Cui, Anhdao T. Darcy, John W. Maull, Ben R. Phillips, Youngjae Kim, Gary J. Jenkins, Thierry R. Sornasse and Yu TianResearch & Development, AbbVie, North Chicago, IL, USA

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Autoantibody binding and unique enzyme-substrate intermediate conformation of human transglutaminase 32023Julie Elisabeth Heggelund, Saykat Das, Jorunn Stamnaes, Rasmus Iversen & Ludvig M. SollidKG Jebsen Coeliac Disease Research Centre, Institute of Clinical Medicine, University of Oslo, Norway

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30-spdthermo-q-exactive-hf
Müller glial cells located in the peripheral retina are more susceptible to high pressure: implications for glaucoma2023Xandra Pereiro, Noelia Ruzafa, Mikel Azkargorta, Felix Elorza, Arantxa Acera, António Francisco Ambrósio, Ana Raquel Santiago, Elena VecinoUniversity of the Basque Country: Universidad del Pais Vasco

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60-spdtimstof-pro
Production in Nicotiana benthamiana of a thermotolerant glucose oxidase that shows enzybiotic activity against Escherichia coli and Staphylococcus aureus2023David Talens-Perales, María Nicolau-Sanus, Julia Marín-Navarro, Julio Polaina, José-Antonio DaròsInstitute of Molecular and Cellular Biology of Plants (Higher Council of Scientific Research-Universitat Politècnica de València), Valencia, Spain

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Postpartum defects in inflammatory response after gestational diabetes precede progression to type 2 diabetes: a nested case-control study within the SWIFT study2023Julie A.D. Van, Yihan Luo, Jayne S. Danska, Feihan Dai, Stacey E. Alexeeff, Erica P. Gunderson, Hannes Rost, Michael B. WheelerDepartment of Physiology, Faculty of Medicine, University of Toronto, Ontario, Canada

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60-spdbruker-timstof-pro
Unlatching of the stem domains in the Staphylococcus aureus pore-forming leukocidin LukAB influences toxin oligomerization2023Juliana K. Ilmain, Sofya S. Perelman, Maria C. Panepinto, Irnov Irnov, Nicolas Coudray, Nora Samhadaneh, Alejandro Pironti, Beatrix Ueberheide, Damian C. Ekiert, Gira Bhabha, Victor J. TorresDepartment of Microbiology, New York University Grossman School of Medicine, New York, USA

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15-spdthermo-q-exactive-hf
Direct isolation of small extracellular vesicles from human blood using viscoelastic microfluidics2023Yingchao Meng, Yanan Zhang, Marcel Bühler, Shuchen Wang, Mohammad Asghari, Alessandra Stürchler, Bogdan Mateescu, Tobias Weiss, Stavros Stavrakis, Andrew J. DemelloInstitute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, Zürich, Switzerland

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30-spdbruker-timstof-pro
Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome2023Constantin Ammar, Sophia C. Mädler, Andreas Metousis, Patricia Skowronek, Maria Wahle, Katherine Madden, Janine Gote-Schniering, Anna Semenova, Herbert B. Schiller, Edwin Rodriguez, Thierry M. Nordmann, Andreas Mund & Matthias MannProteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany,

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30-spd whisper-40spdbruker-timstof-scp
MassSpecPreppy—An end-to-end solution for automated protein concentration determination and flexible sample digestion for proteomics applications2023Alexander Reder, Christian Hentschker, Leif Steil, Manuela Gesell Salazar, Elke Hammer, Vishnu M. Dhople, Thomas Sura, Ulrike Lissner, Hannes Wolfgramm, Denise Dittmar, Marco Harms, Kristin Surmann, Uwe Völker, Stephan MichalikInterfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics, University Medicine Greifswald, Germany

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30-spdtimstof-pro-2
Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition2023Pedro Aragon-Fernandez, Nil Üresin, Gergo Kovacs, Teeradon Phlairaharn, Benjamin Furtwängler, Jeff Op De Beeck, Sarah L. Skovbakke, Steffen Goletz, Simon Francis Thomsen, Ulrich auf dem Keller, Kedar N. Natarajan, Bo T. Porse & Erwin M. SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark,

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whisper-20spd whisper-40spd
Expanding the MAPPs Assay to Accommodate MHC-II Pan Receptors for Improved Predictability of Potential T Cell Epitopes2023Katharina Hartman, Guido Steiner, Michel Siegel, Cary M. Looney, Timothy P. Hickling, Katharine Bray-French, Sebastian Springer, Céline Marban-Doran, and Axel DucretRoche Pharma Research and Early Development, Roche Innovation Center Basel, Switzerland

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whisper-40spdtimstof-pro-2
Exploring the benefits of differential mobility separation and SWATH data independent acquisition for complex proteomic sample analysis2023J.C.Yves Le Blanc, Eva Duchoslav, Lyle Burton, Steve Tate and Brad SchneiderSCIEX,

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100-spd 200-spdsciex-tripletof-6600-ms-system
Heterogeneity of radial spokes structural components and associated enzymes in Tetrahymena cilia2023Marta Bicka, Corbin Black, Avrin Ghanaeian, Ewa Joachimiak, Anna Osinka, Sumita Majhi, Anna Konopka, Ewa Bulska, Khanh Huy Bui, Dorota WlogaLaboratory of Cytoskeleton and Cilia Biology, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland

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30-spdthermo-orbitrap-exploris-480
A dynamic bias in chromatin protein deposition at G-quadruplex sites2023Thamar Jessurun Lobo, Deng Chen, Martijn R. H. Zwinderman, Peter M Lansdorp, Frank J. Dekker, Victor GuryevEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands

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30-spdthermo-orbitrap-exploris-480
Sex differences in brain protein expression and disease2023Yue Liu, Ekaterina S. Gerasimov, Selina M. Vattathil, Jiaqi Liu, David J. Cutler, Michael P. Epstein, Gabriëlla A. M. Blokland, Madhav Thambisetty, Juan C. Troncoso, Duc M. Duong, David A. Bennett, Allan I. Levey, Nicholas T. Seyfried, Thomas S. WingoDepartment of Human Genetics,Goizueta Alzheimer’s Disease Center, Emory University School of Medicine, Atlanta, GA, USA

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60-spdthermo-orbitrap-eclipse-tribid
The potential of plasma HLA peptides beyond neoepitopes2023Maria Wahle, Marvin Thielert, Maximilian Zwiebel, Patricia Skowronek, Wen-Feng Zeng, Matthias MannDepartment Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

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whisper-40spdbruker-timstof-ultra
Comparative proteomics analysis in different stages of urothelial bladder cancer for identification of potential biomarkers: highlighted role for antioxidant activity2023Samira Tabaei, Mohammad Reza Haghshenas, Ali Ariafar, Kambiz Gilany, Allan Stensballe, Shirin Farjadian, Abbas GhaderiShiraz Institute for Cancer Research, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran

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100-spdtimstof-pro-2
A micro-flow, high-pH, reversed-phase peptide fractionation and collection system for targeted and in-depth proteomics of low-abundance proteins in limiting samples2023Marta Zurawska, Mark Basik, Adriana Aguilar-Mahecha, Michal Dadlez, Dominik DomanskiMass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland

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30-spdthermo-orbitrap-exploris-480
Proteogenomic analysis of chemo-refractory high- grade serous ovarian cancer2023Jiayi Ji, Seungyeul Yoo, Chenwei Lin, Uliana J. Voytovich, Yajue Huang, Sun-Hee Lee, Lindsay Bergan, Travis D. Lorentzen, Mehdi Mesri, Henry Rodriguez, Andrew N. Hoofnagle, Zachary T. Herbert, Alexey I. Nesvizhskii, Bing ZhangLester and Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA

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sciex-qtrap-6500
MassSpecPreppy – an end-to-end solution for automated protein concentration determination and flexible sample digestion for proteomics applications2023Alexander Reder, Christian Hentschker, Leif Steil, Manuela Gesell Salazar, Elke Hammer, Vishnu M. Dhople, Thomas Sura, Ulrike Lissner, Hannes Wolfgramm, Denise Dittmar, Marco Harms, Kristin Surmann, Uwe Volker, Stephan MichalikUniversity Medicine Greifswald: Greifswald, DE, ,

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thermo-fisher-ultimate-3000 thermo-orbitrap-exploris-480 timstof-pro-2
Selective targeting of IL2Rbg combined with radiotherapy triggers CD8- and NK-mediated immunity, abrogating metastasis in HNSCC2023Jacob Gadwa, Maria Amann, Thomas E. Bickett, Christian Klein, Angelo D’Alessandro, Sana D. KaramDepartment of Radiation Oncology, University of Colorado, Anschutz Medical Campus, Aurora, USA,

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15-spd 30-spdtimstof-pro
Very early life microbiome and metabolome correlates with primary vaccination variability in children2023Thomas P. Wyche, John Kang, Hendrik Wesseling, Begüm D. Topçuoğlu, Thomas Cairns, Theodore R. Sana, Robin M. Kaufhold, Julia M. Maritz, Christopher H. Woelk, Gokul Swaminathan, James E. Norton Jr., Michael E. PichicheroExploratory Science Center, Merck & Co., Inc., Cambridge, Massachusetts, USA

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whisper-40spdthermo-q-exactive-hf-x
Emergence of the Dickeya genus involved duplication of the OmpF porin and the adaptation of the EnvZ-OmpR signaling network2023Clémence Cochard, Marine Caby, Peggy Gruau, Edwige Madec, Michael Marceau, Iulia Macavei, Jérôme Lemoine, Chrystelle Le Danvic, Franck Bouchart, Brigitte Delrue, Sébastien Bontemps-Gallo, Jean-Marie LacroixUniv. Lille, CNRS, UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, France

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60-spdsciex-zenotof-7600
Red Blood Cells from Individuals with Lesch–Nyhan Syndrome: Multi-Omics Insights into a Novel S162N Mutation Causing Hypoxanthine-Guanine Phosphoribosyltransferase Deficiency2023Julie A. Reisz, Monika Dzieciatkowska, Daniel Stephenson, Fabia Gamboni, D. Holmes Morton, Angelo D’AlessandroDepartment of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA

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timstof-pro
Deep and fast label-free Dynamic Organellar Mapping2023Julia P. Schessner, Vincent Albrecht, Alexandra K. Davies, Pavel Sinitcyn, Georg H. H. BornerDepartment of Proteomics and Signal Transduction, Systems Biology of Membrane Trafficking Research Group, Max-Planck Institute of Biochemistry, Martinsried, Germany,

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30-spd 60-spdthermo-orbitrap-exploris-480
Proteomic Analysis of Dysfunctional Liver Sinusoidal Endothelial Cells Reveals Substantial Differences in Most Common Experimental Models of Chronic Liver Diseases2023Mar Gil, Mikel Azkargorta, Carla Fuster, María Martínez-Gómez, Imma Raurell, Aurora Barberá, Juan Manuel Pericàs, Diana Hide, Felix Elortza, Joan Genescà, María MartellLiver Diseases, Vall d’Hebron Institut de Recerca (VHIR), Liver Unit, Hospital Universitari Vall d’Hebron (HUVH), Vall d’Hebron Barcelona Hospital Campus, Universitat Autònoma de Barcelona (UAB)

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30-spdtimstof-pro
An unconventional TOG domain is required for CLASP localization2023Nelly Gareil, Alison Gervais, Nicolas Macaisne, Guillaume Chevreux, Julie C. Canman, Jessica Andreani, Julien DumontUniversité Paris Cité, CNRS, Institut Jacques Monod

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30-spdtimstof-pro-2
Trans-Omics analysis of post injury thrombo-inflammation identifies endotypes and trajectories in trauma patients2023Christopher B. Erickson, Ian S. Lacroix, Margot Debot, Monika Dzieciatkowska, Terry R. Schaid, Morgan W. Hallas, Otto N. Thielen, Alexis L. Cralley, Anirban Banerjee, Ernest E Moore, Christopher C. Silliman, Angelo D’Alessandro, Kirk C. HansenDepartment of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus; Aurora, CO

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timstof-pro
Cell-type-specific regulation of APOE and CLU levels in human neurons by the Alzheimer’s disease risk gene SORL12023Hyo Lee, Aimee J. Aylward, Richard V. Pearse II, Vilas Menon, Jessica E. Young, Tracy L. Young-PearseAnn Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA

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60-spdthermo-orbitrap-eclipse-tribid
Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel2023Lisa Schweizer, Thierry M Nordmann, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Mitchell P Levesque, Fabian J Theis, Martin Steger, Matthias MannDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

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whisper-40spdtimstof-pro
Quantitative multiorgan proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation2023Lisa Schweizer, Tina Schaller, Maximilian Zwiebel, Özge Karayel, Johannes Bruno Müller-Reif,Wen-Feng Zeng, Sebastian Dintner, Thierry M Nordmann, Klaus Hirschbühl, Bruno Märkl, Rainer Claus, Matthias MannDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

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15-spdthermo-orbitrap-exploris-480
Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae2023Ulises H. Guzman, Henriette Aksnes, Rasmus Ree, Nicolai Krogh, Magnus E. Jakobsson, Lars J. Jensen, Thomas Arnesen, Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, Proteomics Program, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark,

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30-spd 60-spdthermo-orbitrap-exploris-480
Enhanced CellWall and Cell Membrane Activity Promotes Heat2023Li Wang, Aike Li, Jun Fang, Yongwei Wang, Lixian Chen, Lin Qiao, Weiwei WangAcademy of National Food and Strategic Reserves Administration, College of Bioscience and Biotechnology, Hunan Agricultural University, China

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thermo-orbitrap-exploris-480
Mechanisms of nuclear pore complex disassembly by the mitotic Polo-like kinase 1 (PLK-1) in C. elegans embryos2023Sylvia Nkombo Nkoula, Griselda Velez-Aguilera, Batool Ossareh-Nazari, Lucie Van Hove, Cristina Ayuso, Guillaume Chevreux, Laura Thomas, Géraldine Seydoux, Peter Askjaer, Lionel PintardUniversité Paris Cité, CNRS, Institut Jacques Monod

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30-spdtimstof-pro-2
Effects of multiple stressors on pancreatic human islets proteome reveal new insights into the pathways involved2023Mehari Muuz Weldemariam, Putty-Reddy Sudhir, Jongmin Woo, Qibin ZhangCenter for Translational Biomedical Research, University of North Carolina at Greensboro, North Carolina Research Campus, Kannapolis, North Carolina, USA

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15-spdthermo-orbitrap-exploris-240
N-glycosylation acts as a switch for FGFR1 trafficking between the plasma membrane and nuclear envelope2023Paulina Gregorczyk, Natalia Porebska, Dominika Żukowska, Aleksandra Chorążewska, Aleksandra Gędaj, Agata Malinowska, Jacek Otlewski, Małgorzata Zakrzewska, Łukasz OpalińskiFaculty of Biotechnology, Department of Protein Engineering, University of Wroclaw

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15-spdthermo-orbitrap-exploris-480
Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol2023Yuchuan Li, Manoj Amrutkar, Anette Vefferstad Finstadsveen, Knut Tomas Dalen, Caroline S Verbeke, Ivan P. GladhaugUniversity of Oslo, Oslo University Hospital Rikshospitalet

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30-spdbruker-timstof
Cofilin-Driven Nuclear Deformation Drives Dendritic Cell Migration through the Extracellular Matrix2023Shweta Mahajan, Deepti Dabral, Britt Coenen, Frans Bianchi, Niek van Hilten, Herre Jelger Risselada, Wouter H. Roos, Jesper Olsen, Laia Querol Cano, Geert van den BogaartDepartment of Molecular Immunology, Groningen Biomolecular Sciences and Biotechnology,

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30-spd 60-spdthermo-orbitrap-exploris-480
Clinical proteomics reveals vulnerabilities in non-invasive breast ductal carcinoma and drives personalized treatment strategies2023Georgia Mitsa, Livia Florianova, Josiane Lafleur, Adriana Aguilar-Mahecha, Rene P. Zahedi, Sonia V del Rincon, Mark Basik, Christoph H Borchers, Gerald BatistSegal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC

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extended-methodthermo-q-exactive-plus-hybrid-quadrupole-orbitrap
A seven-transmembrane methyltransferase catalysing N-terminal histidine methylation of lytic polysaccharide monooxygenases2023Tanveer S. Batth, Jonas L. Simonsen, Cristina Hernández-Rollán, Søren Brander, Jens Preben Morth, Katja S. Johansen, Morten H. H. Nørholm, Jakob B. Hoof & Jesper V. OlsenThe Novo Nordisk Foundation Center for Protein Research, University of Copenhagen,

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30-spd 60-spdthermo-orbitrap-exploris-480
Protocol for high-throughput semi-automated label-free- or TMT-based phosphoproteome profiling2023Claire Koenig, Ana Martinez-Val, Previn Naicker, Stoyan Stoychev, Justin Jordaan, Jesper V. OlsenEvosep Biosystems, Odense, Denmark, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ReSyn Biosciences, Pretoria, South Africa, , ,

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30-spd 60-spd whisper-20spd whisper-40spdthermo-orbitrap-exploris-480
One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes2023Zilu Ye, Pierre Sabtier, Javier Martin-Gonzalez, Akihiro Eguchi, Dorte Bekker-Jensen, Nicolai Bache, Jesper V. OlsenEvosep Biosystems, Denmark, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, Core Facility for Transgenic Mice, Department of Experimental Medicine, University of Copenhagen, Denmark

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A complete and automated end-to-end sample preparation strategy for high-throughput and standardized proteomics with high sensitivity2023Magnus Huusfeldt, Joel Vej-Nielsen, Dorte B. Bekker-Jensen, Lasse Falkenby, Jesper V. Olsen, Nicolai BacheEvosep Biosystems, Denmark, University of Copenhagen, ,

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100-spd 30-spd whisper-40spd
Pushing the boundaries for robust and high-throughput single cell analysis with Whisper Flow technology powered by dia-PASEF2023Dorte B. Bekker-Jensen, Christoph Krisp, David Hartlmayr, Anjali Seth, Ole B. Hørning, Magnus Huusfeldt, Andreia Almeida, Markus Lubeck, Gary Kruppa, Jarrod Sandow & Nicolai BacheEvosep Biosystems, Bruker Daltonics GmBH & Co. KG, Cellenion, IonOpticks, Bruker s.r.o,

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whisper-40spd whisper-80-spdbruker-timstof-scp
Rapid and robust PTM peptide mapping for biologics with the Evosep One and the ZenoTOF 76002023Moritz Heusel, Stephen Lock, Nick Morrice, Sibylle Heidelberger, Jakob Bunkenborg, Michael Barrett Andersen, Nicolai BacheEvosep Biosystems, SCIEX Macclesfield, , ,

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100-spd 200-spd 300-spd 60-spdsciex-zenotof-7600
A genetic code change in progress: tRNA-Leu(CAG) is conserved in most Saccharomycopsis yeast 3 species but is non-essential and does not compete with tRNA-Ser(CAG) in translation2023Eoin Ó Cinnéide, Caitriona Scaife, Eugene Dillon, Kenneth H. WolfeUniversity College Dublin

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15-spdbruker-timstof-pro
Distribution and Chemistry of Phoenixin-14, a Newly Discovered Sensory Transmission Molecule in Porcine Afferent Neurons2023Urszula Mazur, Ewa Lepiarczyk, Paweł Janikiewicz, Elżbieta Łopieńska-Biernat, Mariusz Krzysztof Majewski and Agnieszka BossowskaUniversity of Warmia and Mazury in Olsztyn

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15-spdthermo-orbitrap-exploris-480
Altered intratumoral immune composition after Nivolumab treatment in patients with recurrent glioblastoma2023Sine Hadrup, Signe Skadborg, Simone Maarup, Arianna Draghi, Annie Borch, Sille Hendriksen, Filip Mundt, Matthias Mann, Jane Skjoeth-Rasmussen, Christina Westmose Yde, Hans Poulsen, Benedikte Hasselbach, Inge Marie SvaneTechnical University of Denmark, Rigshospitalet, Copenhagen University Hospital, University of Copenhagen, Rigshospitalet

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30-spdbruker-timstof-pro
Multiomics analysis of naturally efficacious lipid nanoparticle coronas reveals high-density lipoprotein is necessary for their function2023Kai Liu, Ralf Nilsson, Elisa Lázaro-Ibáñez, Hanna Duàn, Tasso Miliotis, Marie Strimfors, Michael Lerche, Ana Rita Salgado Ribeiro, Johan Ulander, Daniel Lindén, Anna Salvati & Alan SabirshAstraZeneca, University of Gothenburg

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30-spdthermo-q-exactive-hf
Using In Vivo Intact Structure for System-wide Quantitative Analysis of Changes in Proteins2023John Yates III, Ahrum Son, Hyunsoo Kim, Jolene Diedrich, Tom Bamberger, Daniel McClatchyScripps Research Institute, Chungnam National University

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30-spdbruker-timstof-pro
AZGP1 as a potential biomarker of IgA vasculitis with nephritis in a children‑based urinary proteomics study by diaPASEF2023Zhi‑Qing Zhu, Tian Zhang, Shuo Chang, Zhen‑Hua Ren and Qin ZhangFirst Affiliated Hospital of Anhui Medical University, Anhui Medical University

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bruker-timstof
Cross-Linking Mass Spectrometry on P-Glycoprotein2023Gabriella Gellen, Eva Klement, Kipchumba Biwott, Gitta Schlosser,Gergő Kalló, Éva Csősz, Katalin F. Medzihradszky and Zsolt BacsoELTE Eötvös Loránd University, University of Debrecen, HCEMM, BRC

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extended-methodthermo-orbitrap-fusion-lumos
Profiling of the Klebsiella pneumoniae Phosphoproteome under Iron-Limited and Iron-Replete Conditions2023Chelsea Reitzel, Arjun Sukumaran, Benjamin Muselius, Siobhan O’Connor, Jennifer Geddes-McAlisterUniversity of Guelph

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thermo-orbitrap-exploris-240
Topological defects at smectic interfaces as a potential tool for the biosensing of living microorganisms2023Vajra S. Badha, Tagbo H.R. Niepa, and Mohamed Amine GharbiaUniversity of Massachusetts Boston, Carnegie Mellon University,

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bruker-timstof-ht
TIMSTOF Compass 4.0 Methods – LCMS and MALDI – OrsburnLab 2023 v12023Benjamin OrsburnThe Johns Hopkins University School of Medicine

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whisper-40spdbruker-timstof
ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast2023Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska & Roza KucharczykPolish Academy of Sciences

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thermo-orbitrap-exploris-480
DIS3 ribonuclease prevents the cytoplasmic accumulation of lncRNAs carrying non-canonical ORFs, which represent a source of cancer immunopeptides2023Dominika Foretek, Marc Gabriel, Isabelle Hatin, Julien Jarroux, Marina Pinskaya, Elise Pepermans, Kurt Boonen, Rachel Topno, Vera Slaninova, Marina Serna, Oscar Llorca, Geert Baggerman, Edouard Bertrand, Steven West, Olivier NamyInstitut Curie, Institute for Integrative Biology of the Cell, Weill Cornell Medicine, Institut Curie-CNRS, University of Antwerp, Institut Genetique Humaine, Spanish National Cancer Research Center (CNIO), Institut de Génétique Humaine, University of

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30-spdbruker-timstof-pro
The protein and miRNA profile of plasma extracellular vesicles (EVs) can distinguish feline mammary adenocarcinoma patients from healthy feline controls2023Jane Howard, John Browne, Stephanie Bollard, Susan Peters, Ciara Sweeney, Kieran Wynne, Shirley Potter, Amanda McCann & Pamela KellyUniversity College Dublin, Mater Misericordiae University Hospital

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30-spdbruker-timstof-pro
Fast proteomics with dia-PASEF and analytical flow-rate chromatography2023Lukasz Szyrwiel, Christoph Gille, Michael Mülleder, Vadim Demichev, Markus RalserUniversitätsmedizin Berlin, University of Oxford, Max Planck Institute for Molecular Genetics

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Co-administration of angiotensin II and simvastatin triggers kidney injury upon heme oxygenase-1 deficiency2023Aleksandra Kopacz, Damian Kloska, Dominik Cysewski, Izabela Kraszewska, Karolina Przepiorska, Małgorzata Lenartowicz, Agnieszka Łoboda, Anna Grochot-Przęczek, Witold Nowak, Alicja Jozkowicz, and Aleksandra Piechota-PolanczykJagiellonian University, Polish Academy of Sciences, and Białystok,

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30-spdthermo-orbitrap-exploris-480
Vacuum Insulated Probe Heated Electrospray Ionization Source Enhances Microflow Rate Chromatography Signals in the Bruker timsTOF Mass Spectrometer2023Mukul K. Midha, Charu Kapil, Michal Maes, David H. Baxter, Seamus R. Morrone, Timothy J. Prokop, and Robert L. MoritzInstitute for Systems Biology, , , ,

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100-spd 15-spd 200-spd 30-spd 60-spdbruker-timstof
Structural insights into Siglec-15 reveal glycosylation dependency for its interaction with T cells through integrin CD11b2023Maria Pia Lenza, Leire Egia-Mendikute, Asier Antoñana-Vildosola, Cátia O. Soares, Helena Coelho, Francisco Corzana, Alexandre Bosch, Prodhi Manisha, Jon Imanol Quintana, Iker Oyenarte, Luca Unione, María Jesús Moure, Mikel Azkargorta, Unai Atxabal, KlaudiCenter for Cooperative Research in Biosciences, NOVA School of Science and Technology, University of La Rioja,

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Evaluation of a ‘plug and play’ nanoflow liquid chromatography system for MS-based proteomic characterization of clinical FFPE specimens2023Georgia Mitsa, Vincent R Richard, Yasamin Majedi, Josiane Lafleur, Adriana Aguilar-Mahecha, Mark Basik, Christoph H BorchersMcGill University, Jewish General Hospital

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15-spdthermo-q-exactive
More proteome coverage in a single experiment with the Extended method2023Evosep Biosystems

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extended-method
A specialized separation method for hydrophobic targets with the High Organic method2023Evosep Biosystems

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A specialized method using Whisper Flow technology with a throughput of 20 samples per day2023Evosep Biosystems

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whisper-20spd
A specialized method using Whisper Flow technology with a throughput of 80 samples per day2023Evosep Biosystems

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whisper-80-spd
A standardized separation method with a throughput of 500 samples per day2023Evosep Biosystems

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500-spd
A specialized method using Whisper Flow technology with a throughput of 40 samples per day2023Evosep Biosystems

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whisper-40spd
Evotip Pure simplifies workflows with excellent reproducibility, storage and recovery2023Evosep Biosystems, ,

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100-spd 60-spd whisper-40spd
Towards a Standardized Omics Platform with the 60 samples per day method2023EvosepEvosep

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Towards a Standardized Omics Platform with the 100 samples per day method2023EvosepEvosep

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Towards a Standardized Omics Platform with the 200 samples per day method2023EvosepEvosep

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A standardized separation method with a throughput of 300 samples per day2023EvosepEvosep

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300-spdthermo-orbitrap-exploris-480
Evosep One solves the proteomics dilemma – covering high throughput analysis and proteome depth2023Evosep Biosystems, , , ,

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100-spd 200-spd 30-spd 300-spd 60-spd
End-to-end, fully automated digestion protocol and Evotip Pure workflow on the Opentrons OT-22023Evosep BiosystemsEvosep Biosystems,

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100-spd whisper-40spdtimstof-pro-2
Fully automated, rapid, robust sample loading on Evotip Pure with the Agilent AssayMAP Bravo2023Evosep BiosystemsEvosep Biosystems, ,

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100-spd whisper-40spdsciex-zenotof-7600 timstof-pro-2
Epigenetic inactivation of the 5-methylcytosine RNA methyltransferase NSUN7 is associated with clinical outcome and therapeutic vulnerability in liver cancer2023Vanessa Ortiz-Barahona, Marta Soler, Veronica Davalos, Carlos A. García-Prieto, Maxime Janin, Fernando Setien, Irene Fernández-Rebollo, Joan J. Bech-Serra, Carolina De La Torre, Sonia Guil, Alberto Villanueva, Pei-Hong Zhang, Li Yang, Marco Guarnacci, UlrJosep Carreras Leukaemia Research Institute. Barcelona Supercomputing Center (BSC), Germans Trias i Pujol Health Science Research Institute, Bellvitge Biomedical Research Institute, University of Chinese Academy of Sciences, l, Fudan University and Shangh

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15-spdthermo-orbitrap-eclipse-tribid
Comprehensive proteomic characterization and functional annotation of Siberian sturgeon seminal plasma proteins2023Natalia Kodzik, Andrzej Ciereszko, Mirosław Szczepkowski, Halina Karol, Sylwia Judycka, Agata Malinowska, Bianka Swiderska and Mariola A. DietrichPolish Academy of Sciences and Inland Fisheries Institute in Olsztyn

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15-spdthermo-orbitrap-exploris-480
Brain molecular mechanisms in Rasmussen encephalitis2023Dominique F. Leitner, Ziyan Lin, Zacharia Sawaged, Evgeny Kanshin, Daniel Friedman, Sasha Devore, Beatrix Ueberheide, Julia W. Chang, Gary W. Mathern, Jasper J. Anink, Eleonora Aronica, Thomas Wisniewski and Orrin DevinskyNYU Grossman School of Medicine, University of California, University of Amsterdam and Epilepsy Institutes of the Netherlands Foundation

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15-spdthermo-q-exactive-hf-x
Resolving the Temporal Splenic Proteome during Fungal Infection for Discovery of Putative Dual Perspective Biomarker Signatures2023Benjamin Muselius, Florence Roux-Dalvai, Arnaud Droit and Jennifer Geddes-McAlisterUniversity of Guelph, CHU de Québec - Université Laval Research Center and University of Guelph

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60-spdthermo-orbitrap-exploris-480
In situ digestion of alcohol-fixed cells for quantitative proteomics2022Atsushi Hatano, Tomoyo Takami and Masaki MatsumotoGraduate School of Medical and Dental Sciences and Niigata University

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60-spdthermo-orbitrap-exploris-480
Astaxanthin supplementation counters exercise-induced decreases in immune-related plasma proteins2023David C. Nieman, Jongmin Woo, Camila A. Sakaguchi, Ashraf M. Omar, Yang Tang, Kierstin Davis, Alessandra Pecorelli, Giuseppe Valacchi and Qibin ZhangAppalachian State University, University of North Carolina at Greensboro, North Carolina State University and University of Ferrara

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60-spdthermo-orbitrap-exploris-480
Proteomic Analysis of Mesenchymal Stem Cells and Monocyte Co-Cultures Exposed to a Bioactive Silica-Based Sol–Gel Coating2023Andreia Cerqueira, Francisco Romero-Gavilán, Heike Helmholz, Mikel Azkargorta, Félix Elortza, Mariló Gurruchaga, Isabel Goñi, Regine Willumeit-Römer and Julio SuayUniversitat Jaume, Helmholtz-Zentrum Hereon Institute of Metallic Biomaterials, CIC bioGUNE and University of the Basque Country

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30-spdbruker-timstof-pro
In depth profiling of the cancer proteome from the flowthrough of standard RNA-preparation kits for precision oncology2023Filip Mundt, Annelaura Bach Nielsen, Josephine Kerzel Duel, Christina Westmose Yde, Martina Amnitzbøll Eriksen, Ulrik Lassen, Finn Cilius Nielsen, Kristoffer Rohrberg and Matthias MannUniversity of Copenhagen, Novo Nordisk, Copenhagen University Hospital, Rigshospitalet and Max Planck Institute of Biochemistry

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30-spdbruker-timstof-scp
Simultaneous targeting of PD-1 and IL-2Rbg with radiation therapy inhibits pancreatic cancer growth and metastasis2023Miles Piper, Maureen Hoen, Laurel B. Darragh, Michael W. Knitz, Diemmy Nguyen, Jacob Gadwa, Greta Durini, Idil Karakoc, Abby Grier, Brooke Neupert, Benjamin Van Court, Khalid N.M. Abdelazeem, Justin Yu, Nicholas A. Olimpo, Sophia Corbo, Richard Blake RossUniversity of Colorado and Roche Innovation Center Zurich

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whisper-20spdbruker-timstof-scp
Reduced binding of apoE4 to complement factor H promotes amyloid-β oligomerization and neuroinflammation2023Larisa Chernyaeva, Giorgio Ratti, Laura Teirilä, Satoshi Fudo, Uni Rankka, Anssi Pelkonen, Paula Korhonen, Katarzyna Leskinen, Salla Keskitalo, Kari Salokas, Christina Gkolfinopoulou, Katrina E Crompton, Matti Javanainen, Lotta Happonen, Markku Varjosalo,University of Helsinki, University of Eastern Finland, National Center for Scientific Research "Demokritos", Newcastle University, Lund University and Kuopio University Hospital

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60-spdbruker-timstof-pro
Mass spectrometry-based proteomics approaches to interrogate skeletal muscle adaptations to exercise2023Daniel T. Cervone, Roger Moreno-Justicia, Júlia Prats Quesada and Atul S. DeshmukhUniversity of Copenhagen, ,

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Matrix Gla Protein drives stemness and tumor initiation in ovarian cancer2023V. Nieddu, V. Melocchi, C. Battistini, G. Franciosa, M. Lupia, C. Stellato, G. Bertalot, J. V. Olsen, N. Colombo, F. Bianchi and U. CavallaroEuropean Institute of Oncology IRCSS, Fondazione IRCCS Casa Sollievo della Sofferenza, University of Copenhagen, APSS, University of Trento and University of Milan-Bicocca Centre for Medical Sciences – CISMed, taly University of Milan-Bicocca, ondazione I

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30-spdthermo-q-exactive-480
A desert Chlorella sp. that thrives at extreme high-light intensities using a unique photoinhibition protection mechanism2023Guy Levin, Michael Yasmin, Varda Liveanu, Carmit Burstein, Rawad Hanna, Oded Kleifeld, Marc C. Simanowitz, Ayala Meir, Yaakov Tadmor, Joseph Hirschberg, Noam Adir and Gadi SchusterTechnion, Hebrew University of Jerusalem & Newe Ya'ar Research Center

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30-spdthermo-q-exactive-hf
Characteristics of size-exclusion chromatography enriched porcine follicular fluid extracellular vesicles2023Kinga Kaminska, Kasun Godakumara, Bianka Swiderska, Agata Malinowska, Getnet Midekessa, Kamila Sofinska, Jakub Barbasz, Alireza Fazeli and Malgorzata GrzesiakJagiellonian University, Estonian University of Life Sciences, University of Tartu, Polish Academy of Sciences, University of Sheffield

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extended-methodthermo-orbitrap-exploris-480
A Longitudinal Study of Individual Radiation Responses in Pediatric Patients Treated with Proton and Photon Radiotherapy, and Interventional Cardiology: Rationale and Research Protocol of the HARMONIC Project2023Maria Grazia Andreassi, Nadia Haddy, Mats Harms-Ringdahl, Jonica Campolo, Andrea Borghini, François Chevalier, Jochen M. Schwenk, Brice Fresneau, Stephanie Bolle, Manuel Fuentes and Siamak HaghdoostCNR National Research Council Institute of Clinical Physiology, Université Paris-Saclay, Stockholm University, CEA-CNRS-ENSICAEN-University of Caen Normandy, Advanced Resource Center for HADrontherapy in Europe, SciLifeLab and University of Salamanca-CSIC

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60-spdtimstof-pro-2
Flexibility, speed, and throughput for high proteome coverage using Zeno SWATH data-independent acquisition (DIA) coupled with the Evosep One system2023Patrick Pribil and Ihor BatruchSciex, , , , , ,

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100-spd 200-spd 30-spd 300-spd 500-spd 60-spdsciex-zenotof-7600 timstof-pro-2
The GAPDH redox switch safeguards reductive capacity and enables survival of stressed tumour cells2023Deepti Talwar, Colin G. Miller, Justus Grossmann, Lukasz Szyrwiel, Torsten Schwecke, Vadim Demichev, Ana-Matea Mikecin Drazic, Anand Mayakonda, Pavlo Lutsik, Carmen Veith, Michael D. Milsom, Karin Müller-Decker, Michael Mülleder, Markus Ralser  & Tobias PNature Metabolism

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15-spdtimstof-pro-2
Suspension TRAPping Filter (sTRAP) Sample Preparation for Quantitative Proteomics in the Low µg Input Range Using a Plasmid DNA Micro-Spin Column: Analysis of the Hippocampus from the 5xFAD Alzheimer’s Disease Mouse Model2023Evangelia Thanou, Frank Koopmans, Débora Pita-Illobre, Remco V. Klaassen,Berna Özer, Ioannis Charalampopoulos, August B. Smit, and Ka Wan LiAmsterdam Neuroscience, University of Crete, Foundation for Research and Technology Hellas

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30-spdtimstof-pro-2
Simultaneous targeting of PD-1 and IL-2Rβγ with radiation therapy inhibits pancreatic cancer growth and metastasis2023Miles Piper, Maureen Hoen, Laurel B. Darragh, Michael W. Knitz, Diemmy Nguyen, Jacob Gadwa, Greta Durini, Idil Karakoc, Abby Grier, Brooke Neupert, Benjamin Van Court, Khalid N.M. Abdelazeem, Justin Yu, Nicholas A. Olimpo, Sophia Corbo, Richard Blake RossUniversity of Colorado, University of Colorado

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Myosin inhibitor reverses hypertrophic cardiomyopathy in pediatric iPSC-cardiomyocytes to mirror variant correction2023Caroline Kinnear, Abdelrahman Said, Guoliang Meng, Yimu Zhao, Erika Y Wang, Neha Parmar, Wei Wei, Filio Billia, MD, Craig A Simmons, Milica Radisic, James Ellis, Seema MitalThe Hospital for Sick Children, University of Toronto, University Health Network, Massachusetts Institute of Technology, Ted Rogers Centre for Heart Research

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60-spdthermo-orbitrap-fusion-lumos
Dynamic antagonism between key repressive pathways maintains the placental epigenome2023Raha Weigert, Sara Hetzel, Nina Bailly, Chuck Haggerty, Ibrahim A. Ilik, Philip Yuk Kwong Yung, Carmen Navarro, Adriano Bolondi, Abhishek Sampath Kumar, Chiara Anania, Björn Brändl, David Meierhofer, Darío G. Lupiáñez, Franz-Josef Müller, Tugce Aktas, SimTechnische Universität Berlin, , Max Planck Institute for Molecular Genetics, Freie Universität Berlin, Karolinska Institutet, Max-Delbrück Center for Molecular Medicine, Universitätsklinikum Schleswig-Holstein Campus Kiel, Yale School of Medicine, Broad

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30-spdbruker-timstof-scp
Blue Native PAGE–Antibody Shift in Conjunction with Mass Spectrometry to Reveal Protein Subcomplexes: Detection of a Cerebellar α1/α6-Subunits Containing γ-Aminobutyric Acid Type A Receptor Subtype2023Miao Chen,Frank Koopmans, Iryna Paliukhovich,Sophie J. F. van der Spek, Jian Dong, August B. Smit, Ka Wan LiVrije Universiteit Amsterdam, Boston University

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30-spdtimstof-pro-2
Foresight in clinical proteomics: current status, ethical considerations, and future perspectives2023Filip Mundt, Nicolai J. Wewer Albrechtsen, Sebastian Porsdam Mann, Peter Treit, Medini Ghodgaonkar-Steger, Martina O’Flaherty, Reinout Raijmakers, Juan Antonio Vizcaíno, Albert J.R. Heck, Matthias MannUniversity of Copenhagen, University of Oxford, Max Planck Institute of Biochemistry, Utrecht University, European Bioinformatics Institute (EMBL-EBI)

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thermo-orbitrap-exploris-480
Experimental strategies to improve drug-target identification in mass spectrometry-based thermal stability assays2023Clifford G. Phaneuf, Konstantin Aizikov, Dmitry Grinfeld, Arne Kreutzmann, Daniel Mourad, Oliver Lange, Daniel Dai, Bailin Zhang, Alexei Belenky, Alexander A. Makarov & Alexander R. IvanovNortheastern University, Thermo Fisher Scientific, Disease Profiling and Functional Genomics, Tarmeta Biosciences

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30-spdthermo-orbitrap-exploris-480
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems2023Isabell Bludau, Charlotte Nicod, Claudia Martelli, Peng Xue, Moritz Heusel, Andrea Fossati, Federico Uliana, Fabian Frommelt, Ruedi Aebersold, and Ben C. CollinsETH Zürich, Max Planck Institute of Biochemistry, Lund University, University of California San Francisco, Queen’s University of Belfast

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60-spdsciex-tripletof-6600-ms-system
Towards a Standardized Omics Platform with the 30 samples per day method2023EvosepEvosep

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30-spdthermo-orbitrap-exploris-480
A simple, time- and cost-effective, high-throughput depletion strategy for deep plasma proteomics2023Arthur Viode, Patrick van Zalm, Kinga K. Smolen, Benoit Fatou, David Stevenson, Meenakshi Jha, Ofer Levy, Judith Steen and Hanno SteenBoston Children's Hospital, Harvard Medical School, Maastricht University and Broad Institute of MIT and Harvard

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60-spdtimstof-pro-2
A Streamlined High-Throughput Plasma Proteomics Platform for Clinical Proteomics with Improved Proteome Coverage, Reproducibility, and Robustness2023Jongmin Woo and Qibin ZhangUniversity of North Carolina

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60-spdthermo-orbitrap-exploris-240
Cell-type-specific regulation of APOE levels in human neurons by the Alzheimer’s disease risk gene SORL12023Hyo Lee, Aimee J. Aylward, Richard V. Pearse II, Yi-Chen Hsieh, Zachary M. Augur, Courtney R. Benoit, Vicky Chou, Allison Knupp, Cheryl Pan, Srilakshmi Goberdhan, Duc M. Duong, Nicholas T. Seyfried, David A. Bennett, Hans-Ulrich Klein, Philip L. De Jager,Brigham and Women’s Hospital and Harvard Medical School, University of Washington, Emory School of Medicine, Rush University Medical Center & Columbia University Irving Medical Center

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60-spdthermo-orbitrap-eclipse-tribid
INPP5D/SHIP1 regulates inflammasome activation in human microglia2023Vicky Chou, Seeley B. Fancher, Richard V. Pearse II, Hyo Lee, Matti Lam, Nicholas T. Seyfried, David A. Bennett, Phillip L. De Jager, Vilas Menon & Tracy L. Young-PearseBrigham and Women’s Hospital and Harvard Medical School, Columbia University Medical Center, Emory School of Medicine & Rush University Medical Center

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60-spdthermo-orbitrap-eclipse-tribid
DIP-MS: A novel ultra-deep interaction proteomics for the deconvolution of protein complexes2023Fabian Frommelt, Andrea Fossati, Federico Uliana, Fabian Wendt, Xue Peng, Moritz Heusel, Bernd Wollscheid, Ruedi Aebersold, Rodolfo Ciuffa and Matthias GstaigerETH Zurich, University of California San Francisco, J. David Gladstone Institutes, ETHZ Zurich & Evosep Biosystems

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60-spdthermo-q-exactive-970-tm-plus-hybrid-quadrupole-orbitrap
Optimizing linear ion trap data independent acquisition towards single cell proteomics2023Teeradon Phlairaharn, Zilu Ye, Elena Krismer, Anna-Kathrine Pedersen, Maik Pietzner, Jesper V. Olsen, Erwin M. Schoof and Brian C. SearleUniversity of Copenhagen, Technical University of Munich, Germany, Berlin Institute of Health at Charité–Universitätsmedizin & The Ohio State University,

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whisper-20spd whisper-40spdthermo-orbitrap-eclipse-tribid
Luminescence-based screening for extracellular vesicle release modulators reveals a role for PI4KIIIβ in exosome biogenesis upon lysosome inhibition2023Maarten P. Bebelman, Caitrin Crudden, Bart Snieder, Evangelia Thanou, Catharina J.M. Langedijk, Margarida Viola, Steven Eleonora, Urszula Baginska, Olaf Cotugno, Jan Paul M. Bebelman, Monique A.J. van Eijndhoven, Leontien Bosch, Ka Wan Li, Martine J. SmitVrije Universiteit Amsterdam, University Medical Center Utrecht, Université de Paris & Utrecht Universit

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30-spdtimstof-pro-2
Label-free single cell proteomics utilizing ultrafast LC and M Sinstrumentation: A valuable complementary technique to multiplexing2023Manuel Matzinger, Rupert L. Mayer & Kar l. MechtlerVienna BioCenter,

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whisper-20spd whisper-40spd
Mechanisms of Nuclear Pore Complex disassembly by the mitotic Polo Like Kinase 1 (PLK-1) in C. elegans embryos2023Sylvia Nkombo Nkoula, Griselda Velez-Aguilera, Batool Ossareh-Nazari, Lucie Van Hove, Cristina Ayuso, Véronique Legros, Guillaume Chevreux, Laura Thomas, Géraldine Seydoux, Peter Askjaer and Lionel PintardUniversité Paris Cité, Programme équipe Labellisée Ligue contre le Cancer, Johns Hopkins University School of Medicine & CSIC/JA/Universidad Pablo de Olavide

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30-spdtimstof-pro-2
Metabolic heterogeneity and cross-feeding within isogenic yeast populations captured by DILAC2023Stephan Kamrad, Clara Correia-Melo, Lukasz Szyrwiel, Simran Kaur Aulakh, Jürg Bähler, Vadim Demichev, Michael Mülleder & Markus RalserCharité Universitätsmedizin Berlin, The Francis Crick Institute, University College London, University of Oxford & Max Planck Institute for Molecular Genetics

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extended-methodtimstof-pro-2
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H12023Stephen Abini-Agbomson, Kristjan Gretarsson, Rochelle M. Shih, Laura Hsieh, Tracy Lou, Pablo De Ioannes, Nikita Vasilyev, Rachel Lee, Miao Wang, Matthew Simon, Jean-Paul Armache, Evgeny Nudler, Geeta Narlikar, Shixin Liu, Chao Lu & Karim-Jean ArmacheNew York University Grossman School of Medicine, Columbia University Irving Medical Center, The Rockefeller University, University of California, Howard Hughes Medical Institute, Yale University & Pennsylvania State University

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extended-methodthermo-orbitrap-fusion
A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics2023Thierry M. Nordmann, Lisa Schweizer, Andreas Metousis, Marvin Thielert, Edwin Rodriguez, Lise Mette Rahbek-Gjerdrum, Pia-Charlotte Stadler, Michael Bzorek, Andreas Mund, Florian A. Rosenberger & Matthias MannMax Planck Institute of Biochemistry, Zealand University Hospital, LMU Munich & University of Copenhagen

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whisper-20spdbruker-timstof-scp
First trimester serum apolipoproteins in the prediction of late-onset preeclampsia2023Emma J. Bendix, Julie D. Ravn, Lene Sperling & Martin OvergaardOdense University Hospital & University of Southern Denmark

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60-spdthermo-altis-triple-quadrupole
An Electrophysiological and Proteomic Analysis of the Effects of the Superoxide Dismutase Mimetic, MnTMPyP, on Synaptic Signalling Post-Ischemia in Isolated Rat Hippocampal Slices2023Martina Puzio, Niamh Moreton, Mairéad Sullivan, Caitriona Scaife, Jeffrey C. Glennon & John J. O’ConnorUniversity College Dublin

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30-spdbruker-timstof-pro
No-stain protein labeling as a potential normalization marker for small extracellular vesicle proteins2023Anjugam Paramanantham, Rahmat Asfiya, Siddharth Das, Grace McCully & Akhil SrivastavaUniversity of Missouri School of Medicine

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30-spdtimstof-pro-2
Mesenchyme-derived vertebrate lonesome kinase controls lung organogenesis by altering the matrisome2023Salome M. Brütsch, Elizabeta Madzharova, Sophia Pantasis, Till Wüstemann, Selina Gurri, Heiko Steenbock, Amiq Gazdhar, Gisela Kuhn, Peter Angel, Saverio Bellusci, Jürgen Brinckmann, Ulrich auf dem Keller, Sabine Werner and Mattia R. BordoliETH Zurich, Technical University of Denmark, University of Lübeck, University Hospital Bern, German Cancer Research Center, German Lung Research Center & Universities of Giessen and Marburg Lung Center

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30-spdthermo-q-exactive-hf-x
Proteomic characteristics and diagnostic potential of exhaled breath particles in patients with COVID-192023Gabriel Hirdman, Embla Bodén, Sven Kjellström, Carl‑Johan Fraenkel, Franziska Olm, Oskar Hallgren and Sandra LindstedtLund University, Department of Infection Control Region Skåne and Skåne University Hospital

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60-spdbruker-timstof-pro
ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast2023Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska, Roza KucharczykPolish Academy of Sciences

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thermo-orbitrap-exploris-480
Characterization of a highly conserved MUC5B-degrading protease, MdpL, from Limosilactobacillus fermentum2023Fredrik Leo, Gunnel Svensäter, Rolf Lood, Claes WickströmMalmö University, Genovis AB, Lund University

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thermo-q-exactive-hf-x
Vacuum Insulated Probe Heated ElectroSpray Ionization source (VIP-HESI) enhances micro flow rate chromatography signals in the Bruker timsTOF mass spectrometer2023Mukul K. Midha, Charu Kapil, Michal Maes, David H. Baxter, Seamus R. Morrone, Timothy J. Prokop & Robert L. MoritzInstitute for Systems Biology, , , ,

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100-spd 200-spd 30-spd 60-spd extended-methodbruker-timstof-pro
A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics2023Thierry M. Nordmann, Lisa Schweizer, Andreas Metousis, Marvin Thielert, EdwinRodriguez, Lise Mette Rahbek-Gjerdrum, Pia-Charlotte Stadler, Michael Bzorek, Andreas Mund, Florian A. Rosenberger & Matthias MannMax Planck Institute of Biochemistry, Zealand University Hospital, University Hospital Munich & University of Copenhagen

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whisper-20spdbruker-timstof-scp
Proteomic analysis identifies dysregulated proteins and associated molecular pathways in a cohort of gallbladder cancer patients of African ancestry2023Pavan Baichan, Previn Naicker, Tanya Nadine Augustine, Martin Smith, Geofrey Candy, John Devar and Ekene Emmanuel NwekeUniversity of the Witwatersrand, Council for Scientifc and Industrial Research & Chris Hani-Baragwanath Academic Hospital

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60-spdsciex-tripletof-6600-ms-system
Label-free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to multiplexing2023Manuel Matzinger, Rupert L. Mayer & Karl MechtlerVienna BioCenter,

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whisper-20spd whisper-40spd
Extracellular Vesicles Isolated from Plasma of Multiple Myeloma Patients Treated with Daratumumab Express CD38, PD-L1, and the Complement Inhibitory Proteins CD55 and CD592022Kieran Brennan, Katrine F. Iversen, Alfonso Blanco-Fernández, Thomas Lund, Torben Plesner and Margaret M. Mc GeeUniversity College Dublin, University of Southern Denmark & Odense University Hospital

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30-spdbruker-timstof-pro
RGS14 is neuroprotective against seizure-induced mitochondrial oxidative stress and pathology in hippocampus2023Nicholas H Harbin, Daniel J Lustberg, Cheyenne Hurst, Jean-Francois Pare, Kathryn M Crotty, Alaina L Waters, Samantha M Yeligar, Yoland Smith, Nicholas T Seyfried, David Weinshenker and John R HeplerEmory University School of Medicine

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extended-methodthermo-q-exactive-plus-hybrid-quadrupole-orbitrap
SENP2 knockdown in human adipocytes reduces glucose metabolism and lipid accumulation, while increases lipid oxidation2023Solveig A. Krapf, Jenny Lund, Hege G. Bakke, Tuula A. Nyman, Stefano Bartesaghi, Xiao-Rong Peng, Arild C. Rustan, G. Hege Thoresen and Eili T. KaseUniversity of Oslo, Oslo University Hospital & AstraZeneca

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extended-methodsciex-tripletof-6600-ms-system
Systematic Adaptation of Bacillus licheniformis to 2-Phenylethanol Stress2023Yangyang Zhan,Haixia Xu, Hween Tong Tan, Ying Swan Ho, Dongxiao Yang, Shuwen Chen, Dave Siak-Wei Ow, Xin Lv, Fang Wei, Xuezhi Bi and Shouwen ChenHubei University, Bioprocessing Technology Institute (BTI) & Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences

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30-spdsciex-tripletof-6600-ms-system
A chemoproteomic platform for reactive fragment profiling against the deubiquitinases2023Rosa Cookson, Aini Vuorinen, Jonathan Pettinger, Cassandra R. Kennedy, Joanna M. Kirkpatrick, Rachel E. Peltier-Heap, Andrew Powell, Ambrosius P. Snijders, Mark Skehel, David House, Katrin Rittinger and Jacob T. BushGSK & The Francis Crick Institute,

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30-spd 60-spdthermo-orbitrap-fusion-lumos
BRM Complex in Arabidopsis Adopts ncBAF-like Composition and Requires BRD Subunits for Assembly and Stability2023Paulina Stachula, Katarzyna Kapela, Ewelina Malecka, Kamila Jaronczyk, Jacek Patryn, Nina Siwirykow, Maria Bucholc, Malgorzata Marczak, Maciej Kotlinski and Rafal ArchackiUniversity of Warsaw & Institute of Biochemistry and Biophysics PAS

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extended-methodthermo-orbitrap-exploris-480
Exploiting Multi-Omics Profiling and Systems Biology to Investigate Functions of TOMM342023Ekaterina V. Poverennaya, Mikhail A. Pyatnitskiy, Georgii V. Dolgalev, Viktoria A. Arzumanian, Olga I. Kiseleva, Ilya Yu. Kurbatov, Leonid K. Kurbatov, Igor V. Vakhrushev, Daniil D. Romashin, Yan S. Kim and Elena A. PonomarenkoInstitute of Biomedical Chemistry Moscow & Faculty Of Computer Science & National Research University Higher School of Economics Moscow

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30-spdthermo-q-exactive
β-oxidation–polyhydroxyalkanoates synthesis relationship in Pseudomonas putida KT2440 revisited2023Si Liu, Tanja Narancic, Jia‑Lynn Tham & Kevin E. O’ConnorUniversity College Dublin

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30-spdtimstof-pro
Unique DUOX2+ACE2+ small cholangiocytes are pathogenic targets for primary biliary cholangitis2023Xi Li, Yan Li, Jintao Xiao, Huiwen Wang, Yan Guo, Xiuru Mao, Pan Shi, Yanliang Hou, Xiaoxun Zhang, Nan Zhao, Minghua Zheng, Yonghong He, Jingjing Ding, Ya Tan, Min Liao, Ling Li, Ying Peng, Xuan Li, Qiong Pan, Qiaoling Xie, Qiao Li, Jianwei Li, Ying Li, ZDaping Hospital, Xiangya Hospital, Central South University, the First Affiliated Hospital of Wenzhou Medical University, ale University School of Medicine,

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bruker-timstof
Extending the Range of SLIM-Labeling Applications: From Human Cell Lines in Culture to Caenorhabditis elegans Whole-Organism Labeling2023Laurent Lignieres, Nicolas Sénécaut, Tien Dang, Laura Bellutti, Marion Hamon, Samuel Terrier, Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, René-Marc Mege, Julien Dumont, and Jean-Michel CamadroUniversité Paris Cité, Institut de Biologie Physico-Chimique, Institut de Biologie Physico-Chimique Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, René-Marc Mege, ̀ Julien Dumont,Institut de Biologie Physico-Chimique, Institut de Biologie Intégra

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30-spdthermo-orbitrap-fusion
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer2023Antonela Merlotti, Benjamin Sadacca, Yago A. Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira,Université Paris Sciences et Lettres, Laboratory of Clinical immunology, Institute Mutualiste Montsouris, Dana-Farber Cancer Institute, Institut d’Investigacions Biomèdiques de Barcelona-CSIC, Dana-Farber Cancer Institute

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thermo-q-exactive
Quantitative multi-organ proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation2023Lisa Schweizer, Tina Schaller, Maximilian Zwiebel, Özge Karayel, Johannes B. Müller-Reif, Wen-Feng Zeng, Sebastian Dintner, Klaus Hirschbühl, Bruno Märkl, Rainer Claus, Matthias MannMax-Planck Institute of Biochemistry, University Medical Center Augsburg,

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30-spdthermo-orbitrap-exploris-480
PRMT5-mediated regulatory arginine methylation of RIPK32023Chanchal Chauhan, Ana Martinez-Val, Rainer Niedenthal, Jesper Velgaard Olsen, Alexey Kotlyarov, Simon Bekker-Jensen, Matthias Gaestel & Manoj B. MenonHannover Medical School, University of Copenhagen, Indian Institute of Technology Delhi

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60-spdthermo-orbitrap-exploris-480
Identification of Highly Sensitive Pleural Effusion Protein Biomarkers for Malignant Pleural Mesothelioma by Affinity-Based Quantitative Proteomics2023Nicolai B. Palstrøm, Martin Overgaard, Peter Licht , Hans C. BeckOdense University Hospital, University of Southern Denmark,

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60-spdthermo-altis-triple-quadrupole
Differential proteomic profile of lumbar and ventricular cerebrospinal fluid2023Nina Rostgaard, Markus Harboe Olsen, Maud Ottenheijm, Lylia Drici, Anja Hviid Simonsen, Peter Plomgaard, Hanne Gredal, Helle Harding Poulsen, Henrik Zetterberg, Kaj Blennow, Steen Gregers Hasselbalch, Nanna MacAulay, Marianne JuhlerCopenhagen University Hospital, University of Copenhagen, University of Gothenburg,

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60-spdthermo-orbitrap-exploris-480
Recent advances in the field of single-cell proteomics2023Valdemaras Petrosius and Erwin M. SchoofTechnical University of Denmark,

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whisper-20spd whisper-40spd
Comparative proteome and transcriptome analyses of the response of postharvest pears to Penicillium expansum infection2023Meiqiu Xu, Esa Abiso Godana, Solairaj Dhanasekaran, Xiaoyun Zhang, Qiya Yang, Lina Zhao and Hongyin ZhangJiangsu University, Luoyang Normal University

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timstof-pro-2
Chromatographic separation of peptides and proteins for characterization of proteomes2022Yu Liang, Lihua Zhang and Yukui ZhangChinese Academy of Science, ,

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100-spd 200-spd 60-spdthermo-orbitrap-exploris-480
Insight into the antibacterial mechanism of Cuenriched sol–gel coatings employing proteomics2022Francisco Romero-Gavilán, Iñaki García-Arnáez, Andreia Cerqueira, Loredana Scalschi, Begonya Vicedo, Alejandro Villagrasa, Raúl Izquierdo, Mikel Azkargorta, Félix Elortza, Mariló Gurruchaga, Isabel Goñi and Julio SuayUniversitat Jaume I, Universidad del País Vasco, CIC bioGUNE

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timstof-pro
Proteomic evaluation of human osteoblast responses to titanium implants over time2022Francisco Romero-Gavilán, Andreia Cerqueira, Iñaki García-Arnáez, Mikel Azkargorta, Félix Elortza, Marilo Gurruchaga, Isabel Goñi and Julio SuayUniversitat Jaume I, Universidad del País Vasco, CIC bioGUNE

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30-spdtimstof-pro
A targeted multiplex mass spectrometry method for quantitation of abundant matrix and cellular proteins in formalin-fixed paraffin embedded arterial tissue2022Anne-Sofie Faarvang Thorsen, Lars Peter Schødt Riber, Lars Melholt Rasmussen and Martin OvergaardOdense University Hospital. University of Southern Denmark. Steno Diabetes Center Odense.

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60-spdthermo-altis-triple-quadrupole
Hybrid-DIA: Intelligent Data Acquisition for Simultaneous Targeted and Discovery Phosphoproteomics in Single Spheroids2022Ana Martínez-Val, Kyle Fort, Claire Koenig, Leander Van der Hoeven, Giulia Franciosa, Thomas Moehring , Yasushi Ishihama, Yu-ju Chen, Alexander Makarov, Yue Xuan and Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen. Thermo Fisher Scientific. Kyoto University. Academia Sinica

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whisper-40spdthermo-orbitrap-exploris-480
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer’s Biomarker Data2022Frank Koopmans, Ka Wan Li, Remco V. Klaassen, and August B. SmitVU University

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30-spdtimstof-pro
Ultra-high sensitivity for targeted clinical proteomics using Evosep-MRM2022Angela McArdle, Dorte B. Bekker-Jensen, Bharath Kumar Raghuraman, Nicolai BacheEvosep Biosystems

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whisperagilent-6495-triple-quadrupole
A complete and automated sample preparation strategy for high-throughput and standardized proteomics, applied to a clinical cohort of patient plasma samples2022Dorte B. Bekker-Jensen, Florian Harking, Magnus Huusfeldt, Ole Østergaard, Lasse Falkenby, Line Vinderslev Iversen, Jakob Bunkenborg, Angie McArdle, Ole B. Hørning, Nicolai Bache, Jesper V. OlsenEvosep Biosystems, University of Copenhagen, Statens Serum Institut, Bispebjerg University Hospital,,

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500-spd whisper-40spdbruker-timstof-pro
Pushing the boundaries for robust and high-throughput single cell analysis with Whisper Flow technology powered by dia-PASEF2022Dorte B. Bekker-Jensen, Christoph Krisp, David Hartlmayr, Anjali Seth, Ole B. Hørning, Moritz Heusel, Magnus Huusfeldt, Andreia Almeida, Markus Lubeck, Gary Kruppa, Jarrod Sandow, Nicolai BacheEvosep Biosystems, Bruker Daltonics GmBH & Co. KG, Cellenion, IonOpticks, Bruker s.r.o, Brno

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whisper-40spdbruker-timstof-scp
Proteomic profiling of cerebrospinal fluid in pediatric myelin oligodendrocyte glycoprotein antibody-associated disease2022Yi‑Long Wang, Meng‑Ying Zhu, Zhe‑Feng Yuan, Xiao‑Yan Ren, Xiao‑Tong Guo, Yi Hua, Lu Xu, Cong‑Ying Zhao, Li‑Hua Jiang, Xin Zhang, Guo‑Xia Sheng, Pei‑Fang Jiang, Zheng‑Yan Zhao, Feng GaoZhejiang University School of Medicine

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thermo-q-exactive
A complete, automated Opentrons OT-2 loading protocol for simplified sample loading of Evotip Pure2022Evosep, ,

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100-spd 500-spd whisper-40spdbruker-timstof-pro
Rapid and robust PTM peptide mapping for biologics with the Evosep One and the SCIEX ZenoTOF 76002022Evosep, ,

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100-spd 300-spd 60-spdsciex-zenotof-7600
Pushing the boundaries for robust and high-throughput single cell analysis2022Evosep

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whisper-40spdbruker-timstof-scp
Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway2022Valdemaras Petrosius, Jan Benada, Olaf Nielsen, Erwin Marten Schoof, Claus Storgaard SørensenUniversity of Copenhagen, Technical University of Denmark

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30-spdthermo-fisher-ultimate-3000
Robust dimethyl-based multiplex-DIA workflow doubles single-cell proteome depth via a reference channel2023Marvin Thielert, Corazon Ericka Mae Itang, Constantin Ammar, Florian A Schober, Isabell Bludau, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Fabian J Theis, Martin Steger, Matthias MannMax Planck Institute of Biochemistry, Boehringer Ingelheim Pharma GmbH & Co, German Research Center for Environmental Health, Technical University of Munich, NEOsphere Biotechnologies GmbH, University of Copenhagen

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whisper-40spdbruker-timstof-scp
Restoring cellular magnesium balance through Cyclin M4 protects against acetaminophen-induced liver damage2022Irene González-Recio, Jorge Simón, Naroa Goikoetxea-Usandizaga, Marina Serrano-Maciá, Maria Mercado-Gómez, Rubén Rodríguez-Agudo, Sofía Lachiondo Ortega, Clàudia Gil-Pitarch, Carmen Fernández-Rodríguez, Donatello Castellana, Maria U. Latasa, Leticia AbeciCIC bioGUNE, Universidad de Navarra, Marqués de Valdecilla University Hospital, McGill University, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), University of the Basque Country (UPV/EHU), Silence Therapeutic

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bruker-timstof-pro
Enhancing single-cell proteomics through tailored Data-Independent Acquisition and micropillar array-based chromatography2022Valdemaras Petrosius, Pedro Aragon-Fernandez, Nil Üresin, Teeradon Phlairaharn, Benjamin Furtwängler, Jeff op de Beeck, Simon Francis Thomsen, Ulrich auf dem Keller, Bo T. Porse, Erwin M. SchoofTechnical University of Denmark, University of Copenhagen

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whisper-20spdthermo-orbitrap-eclipse-tribid
Characterization of TGF-β signaling in a human organotypic skin model reveals that loss of TGF-βRII induces invasive tissue growth2022Zilu Ye, Gülcan Kilic, Sally Dabelsteen, Irina N. Marinova, Jens F. B. Thøfner, Ming Song, Asha M. Rudjord-Levann, Ieva Bagdonaite, Sergey Y. Vakhrushev, Cord H. Brakebusch, Jesper V. Olsen, Hans H. WandallUniversity of Copenhagen

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30-spdthermo-orbitrap-exploris-480
Two Subgroups within the GH43_36 α-l-Arabinofuranosidase Subfamily Hydrolyze Arabinosyl from Either Mono-or Disubstituted Xylosyl Units in Wheat Arabinoxylan2022Kai P. Leschonski, Svend G. Kaasgaard,Nikolaj Spodsberg, Kristian B. R. M. Krogh, Mirjam A. KabelNovozymes A/S, Wageningen University

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bruker-timstof-pro
Plasma proteomic profling in postural orthostatic tachycardia syndrome (POTS) reveals new disease pathways2022Madeleine Johansson, HongYan, Charlotte Welinder, ÁkosVégvári, Viktor Hamrefors, Magnus Bäck, Richard Sutton, Artur FedorowskiSkåne University Hospital, Swedish National Infrastructure for Biological Mass Spectrometry, Karolinska Institutet, Lund University,

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60-spdbruker-timstof-pro
Programmed death ligand 1 intracellular interactions with STAT3 and focal adhesion protein Paxillin facilitate lymphatic endothelial cell remodeling2022Johnathon B. Schafer, Erin D. Lucas, PhD, Monika Dzieciettkowska, Tadg Forward, Beth A. Jirón TamburiniUniversity of Colorado School of Medicine,

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bruker-timstof-pro
Correlation between biological responses in vitro and in vivo to Ca-doped sol-gel coatings assessed using proteomic analysis2022I. García-Arnáeza, F. Romero-Gavilán, A. Cerqueira, F. Elortza, M. Azkargorta, F. Muñoz, M. Mata, J.J. Martín de Llano, J. Suay, M. Gurruchaga, I.GoñiaUniversity of the Basque Country, Universitat Jaume, Basque Research and Technology Alliance, Campus Universitario, iBoneLab SL, University of Valencia, Research Institute of the University Clinical Hospital of Valencia

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30-spdbruker-timstof-pro
Slice-PASEF: fragmenting all ions for maximum sensitivity in proteomics2022Lukasz Szyrwiel, Ludwig Sinn, Markus Ralser, Vadim DemichevUniversitätsmedizin Berlin, University of Oxford

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200-spdbruker-timstof-pro
Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition2022Patricia Skowronek, Florian Krohs, Markus Lubeck, Georg Wallmann, Ericka Itang, Polina Koval, Maria Wahle, Marvin Thielert, Florian Meier, Sander Willems, Oliver Raether, Matthias MannMax Planck Institute of Biochemistry, Bruker Daltonics GmbH & Co. KG Bremen, Kyiv Academic University, Jena University Hospital, Bruker Belgium, NNF Center for Protein Research,,

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100-spd 60-spdbruker-timstof-pro
Enhanced drug delivery by a prodrug approach effectively relieves neuroinflammation in mice2022Ahmed Montaser, Janita Kuiri, Teemu Natunen, Pavel Hruska, David Potesil, Seppo Auriola, Mikko Hiltunen, Tetsuya Terasaki, Marko Lehtonen, Aaro Jalkanen, Kristiina M HuttunenUniversity of Eastern Finland, Masaryk University, Tohoku University,

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Kinase Inhibitor Pulldown Assay (KiP) for Clinical Proteomics2022Alexander B Saltzman, Doug W Chan, Matthew V Holt, Junkai Wang, Eric J Jaehnig, Meenakshi Anurag, Purba Singh, Anna Malovannaya, Beom-Jun Kim, Matthew J EllisBaylor College of Medicine, MD Anderson Cancer Center, AstraZeneca,

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30-spdthermo-orbitrap-exploris-480
On the potential of micro-flow LC-MS/MS in proteomics2022Yangyang Bian, Chunli Gao, Bernhard Kuster,Northwest University, Technical University of Munich

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300-spdab-sciex-tripletof-6600
Autophagy regulates neuronal excitability by controlling cAMP/protein kinase A signaling at the synapse2022Melina Overhoff, Frederik Tellkamp, Simon Hess, Marianna Tolve, Janine Tutas, Marcel Faerfers, Lotte Ickert, Milad Mohammadi, Elodie De Bruyckere, Emmanouela Kallergi, Andrea Delle Vedove, Vassiliki Nikoletopoulou, Brunhilde Wirth, Joerg Isensee, Tim HuchUniversity of Cologne, University of Lausanne, Leibniz Institute for Molecular Pharmacology, German Center for Neurodegenerative Diseases

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whisper-20spdthermo-q-exactive-480
A Parallelization Strategy for the Time Efficient Analysis of Thousands of LC/MS Runs in High-Performance Computing Environment2022Patrick van Zalm, Arthur Viodé, Kinga Smolen, Benoit Fatou, Arash Nemati Hayati, Christoph N. Schlaffner, Ofer Levy, Judith Steen, Hanno SteenBoston Children's Hospital

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bruker-timstof-pro
2-O-Methylation of the second transcribed nucleotide within the mRNA 5 cap impacts the protein production level in a cell-specific manner and contributes to RNA immune evasion2022Karolina Drazkowska, Rafal Tomecki, Marcin Warminski, Natalia Baran, Dominik Cysewski, Anaıs Depaix, Renata Kasprzyk, Joanna Kowalska, Jacek Jemielity, Pawel J. SikorskiUniversity of Warsaw, Polish Academy of Sciences, Medical University of Bialystok

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30-spdthermo-orbitrap-exploris-480
Common variable immunodeficiency in two kindreds with heterogeneous phenotypes caused by novel heterozygous NFKB1 mutations2022Frederik Staels, Kerstin De Keukeleere, Matias Kinnunen, Salla Keskitalo, Flaminia Lorenzetti, Michiel Vanmeert, Teresa Prezzemolo, Emanuela Pasciuto, Eveline Lescrinier, Xavier Bossuyt, Margaux Gerbaux, Mathijs Willemsen, Julika Neumann, Sien Van Loo, AnKU Leuven, University of Helsinki, University Hospitals Leuven, Babraham Institute

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60-spdbruker-timstof-pro
SARS-CoV-2 Production, Purification Methods and UV Inactivation for Proteomics and Structural Studies Inactivation for Proteomics and Structural Studies2022Zlatka Plavec, Aušra Domanska, Xiaonan Liu, Pia Laine, Lars Paulin, Markku Varjosalo, Petri Auvinen, Sharon G. Wolf, Maria Anastasina, Sarah J. ButcherMolecular and Integrative Biosciences Research Programme, University of Helsinki, Weizmann Institute pf Science,

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60-spdbruker-timstof-pro
Optimizing data points per protein increases protein identifications while maintaining quantitative precision in short gradient data-independent acquisition proteomics2022Joerg Doellinger, Christian Blumenscheit, Andy Schneider, Peter LaschRobert Koch-Institute

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60-spdbruker-timstof-pro
PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074, and THR1075) within the COR GTPase domain2022Asad U. Malik, Athanasios Karapetsas, Raja S. Nirujogi, Sebastian Mathea, Prosenjit Pal, Pawel Lis, Matthew Taylor, Elena Purlyte, Robert Gourlay, Mark Dorward, Simone Weidlich, Rachel Toth, Nicole K. Polinski, Stefan Knapp, Francesca Tonelli & Dario R AlUniversity of Dundee, Collaborative Research Network, Johann Wolfgang Goethe University, AB Sciex

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30-spdthermo-orbitrap-exploris-240
Endosomal Chemokine Receptor Signalosomes Regulate Central Mechanisms Underlying Cell Migration2022Hyunggu Hahn, Carole Daly, John Little IV, Nicole A. Perry Hauser, Asuka Inoue, Bianca Plouffe, Alex R. B. ThomsenNew York University College of Dentistry, Queen’s University Belfast, Columbia University Vagelos College of Physicians and Surgeons, Tohoku University

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thermo-q-exactive-hf-x
Rapid profiling of protein complex re-organization in perturbed systems2022Isabell Blau, Charlotte Nicod, Claudia Martelli, Peng Xue, Moritz Heusel Andreas Fossati, Federico Uliana, Fabian Frommelt, Ruedi Aabersold, Ben C. CollinsETH Zürich, Max Planck Institute of Biochemistry, Lund University, University of California San Francisco, J. David Gladstone Institutes, Queen's University of Belfast

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60-spdab-sciex-tripletof-6600
Cellular proteomic profiling using proximity labelling by TurboID-NES in microglial and neuronal cell lines2022Sydney Sunna, Christine Bowen, Hollis Zeng, Struti Rayaprolu, Prateek Kumar, Pritha Bagchi, Duc M. Duong, Sara Bitarafan, Aditya Natu, Levi Wood, Nicholas T. Seyfried, Srikant RangarajuEmory University, Georgia Institute of Technology

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30-spdthermo-q-exactive
Structural studies reveal that endosomal cations promote formation of 2 infectious CVA9 A particles, facilitating RNA and VP4 release.2022Aušra Domanska, Zlatka Plavec, Visa Ruokolainen, Benita Löflund, Varpu Marjomäki, Sarah J ButcherFaculty of Biological and Environmental Sciences, Molecular and Integrative Bioscience Research Programme, and Helsinki Institute of Life Sciences-Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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60-spdbruker-timstof-pro
Extended detection of anabolics misuse in high-throughput doping controls with the Evosep One2022Evosep

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100-spd
The spike of SARS-CoV-2 promotes metabolic rewiring in hepatocytes2022Maria Mercado-Gómez, Endika Prieto-Fernández, Naroa Goikoetxea-Usandizaga, Laura Vila-Vecilla, Mikel Azkargorta. Miren Bravo, Marina Serrano-Maciá, Leire Egia-Mendikute, Rubén Rodríguez-Agudo, Sofia Lachiondo-Ortega, So Young Lee, Alvaro Eguileor GinéCIC bioGUNE, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas, IIS Hospital La Fe, University of Valencia, Basque Foundation for Science, University of the Basque Country, Centro de Investigación Biomédica En Red de Enferme

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30-spdbruker-timstof-pro
Biomarkers in Neurodegenerative Diseases: Proteomics Spotlight on ALS and Parkinson’s Disease2022Rekha Raghunathan, Kathleen Turajane and Li Chin WongInternational Journal of Molecular Sciences

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Coordinated control of the ADP-heptose/ALPK1 signalling network by the E3 ligases TRAF6, TRAF2/c-IAP1 and LUBAC.2022Tom Snelling, Natalia Shpiro, Robert Gourlay, Frederic Lamoliatte and Philip CohenUniversity of Dundee

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thermo-orbitrap-exploris-240
Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells2022Camille Ternet, Philipp Junk, Thomas Sevrin, Simona Catozzi, Giorgio Oliviero, Kieran Wynne and Christina KielUniversity College Dublin, University of Pavia

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bruker-timstof-pro
The addition of FAIMS increases targeted proteomics sensitivity from FFPE tumor biopsies2022Steve Sweet, David Chain, WenYu, Philip Martin, Marlon Rebelatto, Andrew Chambers, Fabiola Cecchi and Yeoun Jin KimAstraZeneca

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30-spdthermo-orbitrap-fusion-lumos
High-throughput mass spectrometry maps the sepsis plasma proteome and differences in response2022Yuxin Mi, Katie L Burnham, Philip D Charles, Raphael Heilig, Iolanda Vendrell, Justin Whalley, Hew D Torrance, David B Antcliffe, Shaun M May, Matt J Neville, Georgina Berridge. Paula Hutton, Cyndi Goh, Jayachandran Radhakrishnan, Alexey Nesvizhskii,University of Oxford, Wellcome Genome Campus, Imperial College London, Queen Mary University of London, NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, University of Michigan, Imperial College Healthcare NHS Trust

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100-spdbruker-timstof-pro
Widespread hydroxylation of unstructured lysine-rich protein domains by JMJD62022Matthew E. Cockman, Yoichiro Sugimoto, Hamish B. Pegg, Norma Masson, Eidarus Salah, Anthony Tumber, Helen R. Flynn, Joanna M. Kirkpatrick, Christopher J. Schofield and Peter J. RatcliffeFrancis Crick Institute

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30-spdthermo-orbitrap-fusion-lumos
High throughput and high confidence sequence variant analysis in therapeutic antibodies using Evosep One liquid chromatography tandem mass spectrometry with synthetic heavy peptides2022Tyler Greer, Reid O'Brien Johnson, Song Nie, Milos Cejkov, Xiaojing Zheng & Ning LiRegeneron Pharmaceuticals Inc

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30-spdthermo-orbitrap-fusion-lumos
Osteocytes Serve as a Reservoir for Intracellular Persisting Staphylococcus aureus Due to the Lack of Defense Mechanisms2022Marina Garcia-Moreno, Paul M. Jordan, Kerstin Günther, Therese Dau, Christian Fritzsch, Monika Vermes, Astrid Schoppa, Anita Ignatius, Britt Wildemann, Oliver Werz, Bettina Löffler & Lorena TuchscherrJena University Hospital, Friedrich Schiller University Jena, Leibniz Institute on Aging & University Medical Center Ulm

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30-spdthermo-orbitrap-exploris-480
Neddylation tunes peripheral blood mononuclear cells immune response in COVID-19 patients2022Marina Serrano-Maciá, Sofia Lachiondo-Ortega, Paula Iruzubieta, Naroa Goikoetxea-Usandizaga, Alexandre Bosch, Leire Egia-Mendikute, Borja Jiménez-Lasheras, Mikel Azkargorta, Félix Elortza, Diana Martinez-Redondo, Begoña Castro, Juan J. Lozano, Ruben NogueCIC bioGUNE-BRTA, IDIVAL, CIC bioGUNE, CIBEREHD, University of Santiago de Compostela-Instituto de Investigación Sanitaria, Centro de Investigación Biomédica en Red, GAIN, Universidad de Cantabria, Ikerbasque & Basque Foundation for Science

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30-spdbruker-timstof-pro
T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles2022Pablo F. Céspedes, Ashwin Jainarayanan, Lola Fernández-Messina, Salvatore Valvo, David G. Saliba, Elke Kurz, Audun Kvalvaag, Lina Chen, Charity Ganskow, Huw Colin-York, Marco Fritzsche, Yanchun Peng, Tao Dong, Errin Johnson, Jesús A. Siller-Farfán, Omer DThe University of Oxford, Autónoma de Madrid, Centro Nacional de Investigaciones Cardiovasculares (CNIC), University of Oxford, Karolinska Institutet

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60-spdbruker-timstof-pro
High-throughput quantitative proteomics using Zeno SWATH data-independent analysis (DIA) and the Evosep One system2022Ihor Batruch, Yves Le Blanc and Christie HunterSCIEX, , ,

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100-spd 200-spd 30-spd 60-spdsciex-zenotof-7600
Rapid and in-depth coverage of the (phospho-)proteome with deep libraries and optimal window design for dia-PASEF2022Patricia Skowronek, Marvin Thielert, Eugenia Voytik, Maria C. Tanzer, Fynn M. Hansen, Sander Willems, Özge Karayel, Andreas-David Brunner, Florian Meier, Matthias MannMax Planck Institute of Biochemistry, Jena University Hospital, University of Copenhagen, ,

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100-spd 30-spd 60-spdbruker-timstof-pro
Application of In-Cell Fast Photochemical Oxidation of Proteins for the Study of Organoids2022Raquel Shortt, Lisa M. JonesUniversity of Maryland, University of California

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thermo-orbitrap-fusion-lumos
Brain proteome profling implicates the complement and coagulation cascade in multiple system atrophy brain pathology2022Rasmus Rydbirk, Ole Østergaard, Jonas Folke, Casper Hempel, Brian DellaValle, Thomas L. Andresen, Annemette Løkkegaard, Anne‑Mette Hejl, Matthias Bode, Morten Blaabjerg, Mette Møller, Erik H. Danielsen, Lisette Salvesen, Charlotte C. Starhof, Sara BechCopenhagen University Hospital, University of Copenhagen, Technical University of Denmark, GLX Analytix ApS, Odense University Hospital, Aarhus University Hospital

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30-spdthermo-q-exactive-hf-x
Noninvasive proteomic biomarkers for alcohol-related liver disease2022Lili Niu , Maja Thiele , Philipp E. Geyer, Ditlev Nytoft Rasmussen, Henry Emanuel Webel, Alberto Santos, Rajat Gupta, Florian Meier , Maximilian Strauss , Maria Kjaergaard , Katrine Lindvig, Suganya Jacobsen, Simon Rasmussen , Torben Hansen , Aleksander KUniversity of Copenhagen, Max Planck Institute of Biochemistry, Odense University Hospital, University of Southern Denmark, Jena University Hospital, University of Oxford, Pfizer Worldwide Research and Development

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60-spdthermo-orbitrap-exploris-480
Advances in data‐independent acquisition massspectrometry towards comprehensive digital proteomelandscape2022Reta Birhanu Kitata, Jhih‐Ci Yang, Yu‐Ju ChenAcademia Sinica, National Yang Ming Chiao Tung University, National Taiwan University

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Engineered SH2 Domains for Targeted Phosphoproteomics2022Gregory D. Martyn, Gianluca Veggiani, Ulrike Kusebauch, Seamus R. Morrone, Bradley P. Yates, Alex U. Singer, Jiefei Tong, Noah Manczyk, Gerald Gish, Zhi Sun, Igor Kurinov, Frank Sicheri, Michael F. Moran, Robert L. Moritz and Sachdev S. SidhuUniversity of Toronto, Institute for Systems Biology Washington, Hospital for Sick Children Toronto, Mount Sinai Hospital, Cornell University

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Proteomic phenotype of cerebral organoids derived from autism spectrum disorder patients reveal disrupted energy metabolism, cellular components, and biological processes2022Mirolyuba Ilieva, Blanca Irene Aldana, Kasper Tore Vinten, Sonja Hohmann, Thomas William Woofenden, Renate Lukjanska, Helle S Waagepetersen, Tanja Maria MichelUniversity of Southern Denmark, Odense University Hospital, Aalborg University, University of Copenhagen

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Pancreatic INS-1 β-Cell Response to Thapsigargin and Rotenone: A Comparative Proteomics Analysis Uncovers Key Pathways of β-Cell Dysfunction2022Mehari Muuz Weldemariam, Jongmin Woo & Qibin ZhangUniversity of North Carolina at Greensboro

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Proteomics of human biological fluids for biomarker discoveries: technical advances and recent applications2022Loïc Dayon, Ornella Cominetti & Michael AffolterProteomics, Bioanalytics Department, Nestlé Institute of Food Safety & Analytical Sciences, Institut des Sciences et Ingénierie Chimiques

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Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications2022Hironori Sato, Daisuke Nakajima, Masaki Ishikawa, Ryo Konno, Ren Nakamura, Osamu Ohara, & Yusuke KawashimaDepartment of Applied Genomics, Kazusa DNA Research Institute, Department of Pediatrics, Graduate School of Medicine, Chiba University

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Inflammation-induced downregulation of succinate dehydrogenase regulates adrenocortical function2022Ivona Mateska, Anke Witt, Eman Hagag, Anupam Sinha, Canelif Yilmaz, Evangelia Thanou, Na Sun, Ourania Kolliniati, Maria Patschin, Heba Abdelmegeed, Holger Henneicke, Waldemar Kanczkowski, Ben Wielockx, Christos Tsatsanis, Andreas Dahl, Axel Walch, Ka WanTechnische Universität Dresden, Germany, Vrije Universiteit, Netherlands, Helmholtz Centrum München, Germany, University of Crete, Greece

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Zwitter-ionic monolith-based spintip column coupled with Evosep One liquid chromatography for high-throughput proteomic analysis2022Yiran Su, Xi Wang, Yun Yang, Lijun Yang, Ruilian Xu, Ruijun TianSouthern Univrsity of Science and Technology, China, Jinan University, China,

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Ultra sensitive and high throughput proteomics on the standardized Evosep One platform2021Jesper Olsen, Erwin M. SchoofUniversity of Copenhagen, Technical University of Denmark,

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A Non-Hazardous Deparaffinization Protocol Enables Quantitative Proteomics of Core Needle Biopsy-Sized Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Specimens2022Georgia Mitsa, Qianyu Guo, Christophe Goncalves, Samuel E J Preston, Vincent Lacasse, Adriana Aguilar-Mahecha, Naciba Benlimame, Mark Basik, Alan Spatz, Gerald Batist, Wilson H Miller Jr, Sonia V Del Rincon, René P Zahedi, Christoph H BorchersInternational Journal of Molecular Sciences

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Integrative analysis of non-small cell lung cancer patient-derived xenografts identifies distinct proteotypes associated with patient outcomes2022Shideh Mirhadi, Shirley Tam, Quan Li, Nadeem Moghal, Nhu-An Pham, Jiefei Tong, Brian J. Golbourn, Jonathan R. Krieger, Paul Taylor, Ming Li, Jessica Weiss, Sebastiao N. Martins-Filho ,Vibha Raghavan, Yasin Mamatjan, Aafaque A. Khan, Michael Cabanero, ShinNature Communications

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DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii2022Clara Navarrete, Benjamín J. Sánchez, Simonas Savickas, José Luis Martínez RuizDepartment of Biotechnology and Biomedicine,Technical University of Denmark

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DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes2022Anna Maria Sole Giordano, Marco Luciani, Francesca Gatto, Monah Abou Alezz, Chiara Beghè, Lucrezia Della Volpe, Alessandro Migliara, Sara Valsoni, Marco Genua, Monika Dzieciatkowska, Giacomo Frati, Julie Tahraoui-Bories, Silvia Clara Giliani, Simona OrcesJournal of Experimental Medicine

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Chemical probing provides insight into the native assembly state of a bacterial microcompartment2022Daniel S. Trettel, William Resager, Beatrix M. Ueberheide, Conor C. Jenkins, Wade C.WinklerUniversity of Maryland, New York University Grossman School of Health, New York University Grossman School of Medicine

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APP and DYRK1A regulate axonal and synaptic vesicle protein networks and mediate Alzheimer’s pathology in trisomy 21 neurons2022Chun-I Wu, Elizabeth A. Vinton, Richard V. Pearse II, Keunjung Heo, Aimee J. Aylward, Yi-Chen Hsieh, Yan Bi, Sopefoluwa Adeleye, Seeley Fancher, Duc M. Duong, Nicholas T. Seyfried, Thomas L. Schwarz & Tracy L. Young-PearseMolecular Psychiatry

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Nano-LC: An updated review2022Lian Shan, Barry R JonesLC-MS Biologics, QSquared Solutions

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Development of Fast Photochemical Oxidation of Proteins for in Vivo Modification in Caenorhabditis elegans2022Jessica Arlett EspinoUniversity of Maryland,

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Protocol to characterize mitochondrial supercomplexes from mouse tissues by combining BN-PAGE and MS-based proteomics2021Roger Moreno-Justicia, Alba Gonzalez-Franquesa, Ben Stocks, Atul S. DeshmukhNovo Nordisk Foundation (NNF), Copenhagen Denmark

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Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity2022Jaione Auzmendi-Iriarte, Maddalen Otaegi-Ugartemendia, Estefania Carrasco-Garcia, Mikel Azkargorta, Antonio Diaz, Ander Saenz-Antonanzas, Joaquin Andrés Andermatten, Mikel Garcia-Puga, Idoia GarciaUniversity of the Basque Country

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Robust and high-throughput single cell proteomics with the Evosep One2022Evosep

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Comprehensive proteomics with 8.000 proteins identified with DIA-PASEF using the 30 samples per day method2022Evosep

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A semi automated AssayMAP bravo protocol for robust Evotip loading and high-throughput analysis on the Evosep One2022Evosep

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Improve and enhance your proteome coverage with the performance column for our long methods2022Evosep,

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ASMS 2022 highlights: Robust and high-throughput analysis with ultra-high sensitivity2022Dorte Bekker-Jensen, Angela Mc Ardle, Nicolai BacheEvosep

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High sensitivity limited material proteomics empowered by data- independent acquisition on linear ion traps2022Teeradon Phlairaharn, Lukas R. Woltereck, Samuel Grégoire, Benjamin Furtwängler, Erwin M. SchoofTechnical University of Denmark,

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Transcription factor-driven coordination of cell cycle exit and lineage-specification in vivo during granulocytic differentiation2022Kim Theilgaard-Mönch, Sachin Pundhir, Kristian Reckzeh, Jinyu Su, Marta Tapia, Benjamin Furtwängler, Johan Jendholm, Janus Schou Jakobsen, Marie Sigurd Hasemann, Kasper Jermiin Knudsen, Jack Bernard Cowland, Anna Fossum, Erwin SchoofUniversity of Copenhagen, Technical University of Denmark

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Using Targeted Liquid Chromatography-Tandem Mass Spectrometry to Rapidly Detect β-Lactam, Aminoglycoside, and Fluoroquinolone Resistance Mechanisms in Blood Cultures Growing E. coli or K. pneumoniae2022Dimard E. Foudraine, Lennard J. M. Dekker, Nikolaos Strepis, Stan J. Nispeling, Merel N. Raaphorst, Wendy Kloezen, Piet Colle, Annelies Verbon, Corné H. W. Klaassen, Theo M. Luider, Wil H. F. GoessensErasmus MC,

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Profiling the Plasma Apolipoproteome of Normo- and Hyperlipidemic Mice by Targeted Mass Spectrometry2022Lasse Bach Steffensen, Jannik Larsen, Didde Riisager Hansen, Thi My Linh Tha, Niels Strømvig Larsen, Hans Christian Beck, Lars Melholt Rasmussen, Martin OvergaardUniversity of Southern Denmark (SDU), Odense

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Antimicrobial resistance with the Evosep One2022Dimard Foudraine, Florence Roux DalvaiErasmus MC, Laval University

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Toxoplasma gondii ROP1 subverts murine and human innate immune restriction2022Simon Butterworth, Francesca Torelli, Eloise J. Lockyer, Jeanette Wagener, Ok-Ryul Song, Malgorzata Broncel, Matt R. G. Russell, Joanna C. Young, Moritz TreeckThe Francis Crick Institute, London.

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A fast and sensitive absolute quantification assay for the detection of sars-cov-2 peptides using parallel reaction monitoring mass spectrometry2022Akshada Gajbhiye, Atakan Nalbant, Tiaan Heunis, Frances Sidgwick, Andrew Porter, Yusri Taha, Matthias TrostNewcastle University

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ABPP-HT* – Deep meets fast for activity-based profiling of deubiquitylating enzymes using advanced DIA and DDA mass spectrometry methods2022Hannah B. L. Jones, Raphael Heilig, Simon Davis, Roman Fischer, Benedikt M. Kessler, Adán Pinto-FernandezUniversity of Oxford

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Numb exon 9 inclusion regulates Integrinβ5 surface expression and promotes breast cancer metastasis2022Yangjing Zhang, Sascha E. Dho, Kamal Othman, Craig D. Simpson, Jessica Lapierre, Andrew Bondoc & C. Jane McGladeDepartment of Medical Biophysics, University of Toronto., The Arthur and Sonia Labatt Brain Tumour Research Centre., SPARC BioCentre, The Hospital for Sick Children.

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Beta thalassemia minor is a beneficial determinant of red blood cell storage lesion2022Vassilis L. Tzounakas, Alkmini T. Anastasiadi, Davide Stefanoni, Francesca Cendali, Lorenzo Bertolone, Fabia Gamboni, Monika Dzieciatkowska, Pantelis Rousakis, Athina Vergaki, Vassilis Soulakis, Ourania E. Tsitsilonis, Konstantinos Stamoulis, Issidora S.Department of Biology, Section of Cell Biology and Biophysics, School of Science, National and Kapodistrian University of Athens., Department of Biochemistry and Molecular Genetics, University of Colorado, School of Medicine-Anschutz Medical Campus.

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High-Field Asymmetric Waveform Ion Mobility Spectrometry and Parallel Reaction Monitoring Increases Sensitivity for Clinical Biomarker Quantitation from FormalinFixed, Paraffin-Embedded Tumor Biopsies2022Steve Sweet, David Chain, Wen Yu, Philip Martin, Marlon Rebelatto, Andrew Chambers,1 Fabiola Cecchi, Yeoun Jin KimTranslational Medicine, Oncology R&D, Data Science and AI, BioPharmaceuticals R&D, AstraZeneca, Gaithersburg, MD

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The setup and optimization of a complete global proteomics two-dimensional liquid chromatography system, using Spider Fractionation2021Eris Aas BakketeigUniversity of Oslo, Oslo, Norway

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Doxycycline Alters the Porcine Renal Proteome and Degradome during Hypothermic Machine Perfusion2022Leonie van Leeuwen, Leonie H. Venema, Raphael Heilig, Henri G. D. Leuvenink, Benedikt M. KesslerUniversity of Groningen, Groningen, The Netherlands, Target Discovery Institute, University of Oxford, Oxford, UK, Chinese Academy of Medical Sciences Oxford Institute, University of Oxford, Oxford, UK

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P018 Proteomic profile of serum and urine in newly diagnosed patients with Inflammatory Bowel Disease: new approach for biomarker discovery2022Montse Baldan Martin, Mikel Azkargorta Mujika, Lorena Ortega-MorenoHospital Universitario de La Princesa, CIC bioGune, Bilbao, Spain

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Recent Developments in Clinical Plasma Proteomics—Applied to Cardiovascular Research2022Nicolai Bjødstrup Palstrøm, Rune Matthiesen, Lars Melholt Rasmussen, Hans Christian BeckOdense University Hospital, Odense, Denmark, Universidade NOVA de Lisboa, Lisbon, Portugal

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Proteomics based markers of clinical pain severity in juvenile idiopathic arthritis2022Hanne Van Der Heijden, Benoit Fatou, Kacie Hoyt, Benjamin Goodlett, Camilo Jaimes, Hanno Steen, Jaymin UpadhyayBoston Children’s Hospital MA, USA, Maastricht University, Maastricht, The Netherlands, University of Amsterdam, Amsterdam, The Netherlands, BioSAS Consulting, Inc, Wellesley, MA, USA, McLean Hospital, Harvard Medical School, MA, Belmont, USA

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Structural mechanism for the selective phosphorylation of DNA-loaded MCM double hexamers by the Dbf4-dependent kinase2021Julia F. Greiwe, Thomas C. R. Miller, Julia Locke, Fabrizio Martino, Steven Howell, Anne Schreiber, Andrea Nans, John F. X. Diffley & Alessandro CostaThe Francis Crick Institute, London, UK

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FASN-dependent de novo lipogenesis is required for brain development2022Daniel Gonzalez-Bohorquez, Isabel M. Gallego López, Baptiste N. Jaeger, Sibylle Pfammatter, Megan Bowers, Clay F. Semenkovich & Sebastian JessbergerUniversity of Zurich, Switzerland. University School of Medicine, St. Louis, US

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Hyperinflammatory environment drives dysfunctional myeloid cell effector response to bacterial challenge in COVID-192022Srikanth Mairpady Shambat, Alejandro Gómez-Mejia, Tiziano A. Schweizer, Markus Huemer, Chun-Chi Chang, Claudio Acevedo, Judith Bergada-Pijuan, Clément Vulin, Daniel A. Hofmaenner, Thomas C. Scheier, Sanne Hertegonne, Elena Parietti, Nataliya Miroshnikova,University Hospital of Zurich, University of Zurich, Switzerland

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Introducing Evotip Pure: A new generation of Evotip – It’s all in the tip2022Nicolai Bache, Dorte Bekker-JensenEvosep

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Ultra-high sensitivity proteomics on the timsTOF SCP2021Nagarjuna Nagaraj, Thomas Kosinski, Amalia Apalategui Pierre-Olivier Schmit, Markus Lubeck, Oliver Raether & Gary KruppaBruker, Germany.

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The social architecture of an in-depth cellular protein interactome2021André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau & Matthias MannMax-Planck Institute of Biochemistry, Martinsried, Germany

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Data independent acquisition enables deep and fast label-free dynamic organellar mapping2021Julia P. Schessner, Vincent Albrecht, Alexandra K. Davies, Pavel Sinitcyn & Georg H.H. BornerMax-Planck Institute of Biochemistry, Martinsried, Germany,

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Fully Automated High-Throughput Host Cell Protein Analysis of Highly Diverse Samples2021Anders Giessing

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Evotip Pure: A new generation of Evotip2022Evosep

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Unleash the power of DIA2022Patricia Skowronek, Yves Le Blanc, Ihor BatruchMax Planck Institute of Biochemistry, Sciex

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Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation2020Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B. Horning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Oliver Raether, Melvin A. Park, Sabrina Richter, David S. Fischer, Fabian J. ThMax Planck Institute of Biochemistry, Martinsried, Germany. Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark. Evosep Biosystems, Denmark. Bruker Daltonik, Germany and United States. Helmholtz Zentrum München, Germany.,

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Proteomics at the single cell level with Evosep Whisper and the timsTOF SCP2022Bruker Daltonics

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Evosep One in the clinical biochemistry lab2022Nicolai Jacob Wewer Albrechtsen, Martin OvergaardOdense University Hospital, University of Southern Denmark, NNF center for protein research, University of Copenhagen

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A beginner’s guide to Evosep2022Nicolai Bache & Ireshyn GovenderEvosep, Resyn Biosciences

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Whisper is here2021Christoph Krisp & Angela KruseBruker, Vanderbilt University

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FFPE Tissue Analysis on the Evosep One2021Bernhard Kuster & Lisa SchweizerTechnical University of Munich, Max Planck Institute of Biochemistry

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Automated sample prep workflows2021Philipp E. Geyer & Dorte Bekker-JensenOmicera Diagnostics, Evosep

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Development of a Standardized Microflow LC Gradient to Enable Sensitive and Long-Term Detection of Synthetic Anabolic-Androgenic Steroids for High-Throughput Doping Controls2021Vivian Delcourt, Patrice Garcia, Isabelle Pottier, Nasrine Mansoibou, Nicolai Bache, Yohan Glavieux, Benjamin Chabot, Isabelle Perot, Isabelle Perot, François André, Benoit Loup, Agnès Barnabé, Marie-Agnès Popot & Ludovic Bailly-ChouriberryGIE-LCH, Laboratoire Des Courses Hippiques, France. Evosep.

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Plasma extracellular vesicles in people living with HIV and type 2 diabetes are related to microbial translocation and cardiovascular risk2021Beate Vestad, Tuula A. Nyman, Malene Hove‑Skovsgaard, Maria Stensland, Hedda Hoel, Anne‑Marie Siebke Trøseid, Trude Aspelin, Hans Christian D. Aass, Maija Puhka, Johannes R. Hov, Susanne Dam Nielsen, Reidun Øvstebø & Marius TrøseidOslo University Hospital Rikshospitalet, Oslo, Norway. University of Oslo, Oslo, Norway. Norwegian Society for Extracellular Vesicles, Oslo, Norway. University Hospital of Copenhagen Rigshospitalet, Copenhagen, Denmark. Lovisenberg Diaconal Hospital, Oslo

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DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii2021Clara Navarrete, Benjamín J. Sánchez, Simonas Savickas, José L. MartínezTechnical University of Denmark. Denmark.

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Evaluation of Disposable Trap Column nanoLC–FAIMS–MS/MS for the Proteomic Analysis of FFPE Tissue2021Stephan Eckert, Yun-Chien Chang, Florian P. Bayer, Matthew The, Peer-Hendrik Kuhn, Wilko Weichert & Bernhard KusterTechnical University of Munich, Munich, Germany., ,

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High-Throughput Drug Discovery with the Evosep One2021Casimir Bamberger & Tanveer S. BatthScripps Research Institute & Novo Nordisk Foundation Center for Protein Research

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Targeted Workflows with Evosep One2021Michael Maccoss & Vivian DelcourtUniversity of Washington & Laboratoire Des Courses Hippiques

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Plasma Proteomics with the Evosep One2021Roman Fischer & Lili NiuUniversity of Oxford & Novo Nordisk Foundation Center for Protein Research,

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Discovery Proteomics for COVID-19: Where We Are Now2021Angela McArdle, Kirstin E. Washington, Blandine Chazarin Orgel, Aleksandra Binek, Danica-Mae Manalo, Alejandro Rivas, Matthew Ayres, Rakhi Pandey, Connor Phebus, Koen Raedschelders, Justyna Fert-Bober & Jennifer E Van EykCedars-Sinai Medical Center, Los Angeles, California, United States

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AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization2021Sander Willems, Eugenia Voytik, Patricia Skowronek, Maximilian T. Strauss & Matthias MannMax Planck Institute of Biochemistry, Martinsried, Germany. OmicEra Diagnostics GmbH, Planegg, Germany. University of Copenhagen, Copenhagen, Denmark,

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Deep neural network for detecting arbitrary precision peptide features through attention based segmentation2021Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan & Ming LiUniversity of Waterloo, Waterloo, Canada. Bioinformatics Solutions Inc., Waterloo, Canada.

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A deeper look at carrier proteome effects for single-cell proteomics2021Zilu Ye, Tanveer Batth, Patrick L. Rüther, Jesper V. OlsenUniversity of Copenhagen

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Time evolution of PEG-shedding and serum protein coronation determines the cell uptake kinetics and delivery of lipid nanoparticle formulated mRNA2021A. Gallud, M. J. Munson, K. Liu, A. Idström, H. M. G. Barriga, S. R. Tabaei, N. Aliakbarinodehi, M. Ojansivu, Q. Lubart, J. J. Doutch, M. N. Holme, L. Evenäs, L. Lindfors, M. M. Stevens, A. Collén, A. Sabirsh, F. Höök, E. K. Esbjörner.Chalmers University of Technology, Gothenburg, Sweden. AstraZeneca, Gothenburg, Sweden. Karolinska Institute, Stockholm, Sweden. Rutherford Appleton Laboratory, Didcot, UK. Imperial College London, UK.

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PD-L1 Overexpression, SWI/SNF Complex Deregulation, and Profound Transcriptomic Changes Characterize Cancer-Dependent Exhaustion of Persistently Activated CD4+ T Cells2021Iga Jancewicz, Joanna Szarkowska, Ryszard Konopinski, Malgorzata Stachowiak, Monika Swiatek, Katarzyna Blachnio, Szymon Kubala, Paulina Oksinska, Pawel Cwiek, Natalia Rusetska, Agnieszka Tupalska, Natalia Zeber-Lubecka, Ewa Grabowska, Bianka Swiderska,Maria Sklodowska-Curie National Research Institute of Oncology, Warsaw, Poland. Polish Academy of Sciences, 02-106 Warsaw, Poland. University Hospital Basel and University of Basel, 4001 Basel, Switzerland. Centre of Postgraduate Medical Education, 01-8

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A universal peptide matrix interactomics approach to disclose motif dependent protein binding2021Evelyn Ramberger, Lorena Suarez-Artiles, Daniel Perez-Hernandez, Mohamad Haji, Oliver Popp, Ulf Reimer, Achim Leutz, Gunnar Dittmar & Philipp MertinsMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany. Luxembourg Institute of Health, Luxembourg. JPT Peptide Technologies GmbH, Berlin, Germany. Humboldt University of Berlin, Berlin, Germany. University of Luxembourg

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Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study2021IMPACC Manuscript Writing TeamIMPACC

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AlphaPept, a modern and open framework for MS-based proteomics2021Maximilian T. Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems & Matthias MannMax Planck Institute of Biochemistry, Martinsried, Germany. University of Copenhagen, Denmark. Nvidia Corporation, Santa Clara, CA, USA. OmicEra Diagnostics GmbH, Planegg, Germany. Jena University Hospital, Jena, Germany.

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A personalized mass spectrometry-based assay to monitor M-protein in multiple myeloma patients (EasyM)2021Mariya Liyasova, Zac McDonald, Paul Taylor, Kathleen Gorospe, Xin Xu, Chenyu Yao, Qixin Liu, Liqiang Yang, Eshetu G. Atenafu, Giovanni Piza, Bin Ma, Donna Reece, Suzanne TrudelRapid Novor, Canada. University of Waterloo, Canada. Princess Margaret Cancer Centre, Canada., ,

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Exploitation of the Secretory Pathway by SARS-CoV-2 Envelope2021Guy J Pearson, Malgorzata Broncel, Ambrosius P Snijders & Jeremy G CarltonKing’s College London, UK. The Francis Crick Institute, UK.

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Mass Spectrometry Provides a Highly Sensitive Noninvasive Means of Sequencing and Tracking M-Protein in the Blood of Multiple Myeloma Patients2021Zac McDonald, Paul Taylor, Mariya Liyasova, Qixin Liu & Bin MaRapid Novor, Canada

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Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass2021Dimard E. Foudrainehttps, Nikolaos Strepisa, Corné H. W. Klaassenhttps, Merel N. Raaphorsta, Annelies Verbona, Theo M. Luiderb, Wil H. F. Goessensa & Lennard J. M.Erasmus MC University Medical Center, Rotterdam, The Netherlands

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Synthetic Antigen Presenting cells reveal the diversity and functional specialisation of extracellular vesicles composing the fourth signal of T cell immunological synapses2021Pablo F. Céspedes, Ashwin Jainarayanan, Lola Fernández-Messina, Salvatore Valvo, David G. Saliba, Audun Kvalvaag, Elke Kurz, Huw Colin-York, Marco Fritzsche, Yanchun Peng, Tao Dong, Jesús A. Siller-Farfán, Omer Dushek, Michal Maj, Erdinc Sezgin, Ben PeacoThe University of Oxford, Oxford, UK. Universidad Autónoma de Madrid, Madrid, Spain. Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain. Karolinska Institutet, Stockholm, Sweden. MediCity, Nottingham, UK.

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A blood atlas of COVID-19 defines hallmarks of disease severity and specificity2021COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium, Julian C Knight.University of Oxford

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An ultrasensitive method for analysis of viral spike N-glycoforms2021Sabyasachi Baboo, Jolene K Diedrich, Salvador Martínez-Bartolomé, Xiaoning Wang, Torben Schiffner, Bettina Groschel, William R Schief, James C Paulson & John R Yates IIIMassachusetts Institute of Technology and Harvard, Cambridge, MA, USA. The Scripps Research Institute, La Jolla, CA, USA.,

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Proteomics of resistance to Notch1 inhibition in acute lymphoblastic leukemia reveals targetable kinase signatures2021Giulia Franciosa, Jos G. A. Smits, Sonia Minuzzo, Ana Martinez-Val, Stefano Indraccolo & Jesper V. OlsenUniversity of Padova, Padova, Italy. University of Copenhagen, Denmark.,

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Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells2021YoungJun Ju, Yaacov Ben-David, Daniela Rotin & Eldad ZacksenhausUniversity Health Network, Toronto, Canada. Chinese Academic of Sciences, Guiyang, China. Guizhou Medical University, Guiyang, China. The Hospital for Sick Children, Toronto, Canada.

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A fleet of Evosep One instruments supports a proteomics factory at Rapid Novor2021Evosep. Rapid NovorEvosep. Rapid Novor

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High Sensitivity Evotips2021EvosepEvosep

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Unleashing the power of DIA combined with short gradients using Evosep One2021Florian Meier & Vadim DemchevFriedrich Shiller University, Jena, Germany. Francis Crick Institute, UK., ,

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Unleashing the true power of DIA/SWATH data acquisition with short gradients – Rapid profiling of pre-clinical models and proteome dynamics2019Evosep

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Improve and enhance your proteome coverage with the Performance column2019Evosep,

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Evosep One: A Separation Tool Designed for Clinical Omics2019Evosep

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Co-translational assembly and localized translation of nucleoporins in nuclear pore complex biogenesis2021Ophélie Lautier, Arianna Penzo, Jérôme Rouvière, Guillaume Chevreux, Louis Collet, Isabelle Loïodice, Angela Taddei, Frédéric Devaux, Martine A. Collart & Benoit PalancadeUniversité de Paris, Paris, France. Sorbonne Université, Paris, France. University of Geneva, Geneva, Switzerland.

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30-spd
Hemorrhage and saline resuscitation are associated with epigenetic and proteomic reprogramming in the rat lung2021Alexander Bonde, Trine G. Eskesen, Jacob Steinmetz, Erwin M. Schoof, Lene H.D. Blicher, Lars S. Rasmussen & Martin SillesenRigshospitalet, University of Copenhagen, Denmark. Technical University of Denmark, Lyngby, Denmark.

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Standardized workflow for precise mid- and high-throughput proteomics of blood biofluids2021Angela Mc Ardle, Aleksandra Binek, Annie Moradian, Blandine Chazarin Orgel, Alejandro Rivas, Kirstin E. Washington, Conor Phebus, Danica-Mae Manalo, James Go, Vidya Venkatraman, Casey Johnson, Qin Fu, Susan Cheng, Koen Raedschelders, Justyna-Fert Bober, SCedars-Sinai Medical Center, Los Angeles, CA, United States. University College Dublin, Dublin, Ireland.

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Malaria Parasite Schizont Egress Antigen-1 Plays an Essential Role in Nuclear Segregation during Schizogony2021Abigail J. Perrin, Claudine Bisson, Peter A. Faull, Matthew J. Renshaw, Rebecca A. Lees, Roland A. Fleck, Helen R. Saibil, Ambrosius P. Snijders, David A. Baker & Michael J. BlackmanThe Francis Crick Institute, London, UK. University of London, London, UK. King’s College London, London, UK. London School of Hygiene & Tropical Medicine, London, UK

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30-spdthermo-orbitrap-fusion-lumos
The COVIDome Explorer Researcher Portal2021Kelly D. Sullivan, Matthew D. Galbraith, Kohl T. Kinning, Kyle Bartsch, Nik Levinsky, Paula Araya, Keith P. Smith, Ross E. Granrath, Jessica R. Shaw, Ryan Baxter, Kimberly R. Jordan, Seth Russell, Monika Dzieciatkowska, Julie A. Reisz, Fabia Gamboni, FranUniversity of Colorado, CO, USA. University of Colorado Anschutz Medical Campus, Aurora, CO, USA. Colorado School of Public Health, Aurora, CO, USA.

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High sensitivity dia-PASEF proteomics with DIA-NN and FragPipe2021Vadim Demichev, Fengchao Yu, Guo Ci Teo, Lukasz Szyrwiel, George A. Rosenberger, Jens Decker, Stephanie Kaspar-Schoenefeld, Kathryn S. Lilley, Michael Mülleder, Alexey I. Nesvizhskii & Markus RalserThe Francis Crick Institute, London, UK. Charité – Universitätsmedizin Berlin, Germany. University of Cambridge, UK. University of Michigan, Ann Arbor, USA. Columbia University, New York, USA. Bruker Daltonics, Bremen, Germany, ,

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A robust mass spectrometer for precision medicine – the Orbitrap Exploris 240 mass spectrometer for large-scale plasma protein profiling2021Michelle L Dubuke, Sitara Chauhan, Sarah Trusiak & Emily I. ChenThermo Fisher Scientific, United States

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Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers2021Christoph H Mayr, Lukas M Simon, Gabriela Leuschner, Meshal Ansari, Janine Schniering, Philipp E Geyer, Ilias Angelidis, Maximilian Strunz, Pawandeep Singh, Nikolaus Kneidinger, Frank Reichenberger, Edith Silbernagel, Stephan Böhm, Heiko Adler, Michael LiHelmholtz Zentrum München, Munich, Germany. Ludwig‐Maximilians University (LMU) Munich, Munich, Germany. University Hospital Zurich, Zurich, Switzerland. Max Planck Institute of Biochemistry, Martinsried, Germany. Asklepios Fachkliniken Munich‐Gauting, Mu,

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Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease2021Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M Allan, Alessandra Granata, Sanjay Sinha, Tao Wang, Hugh S Markus, Alexandra Naba, Roman Fischer, Tom Van Agtmael, Karen Horsburgh & M. Zameel CaderUniversity of Oxford, UK. University of Edinburgh, UK. University of Glasgow. UK. University of Manchester, UK. Manchester Academic Health Science Centre, UK. Cambridge Biomedical Campus, Hills Road, UK. University of Illinois at Chicago, USA.

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Evotips: Quick guide2022Evosep

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Rapid, robust and reproducible host-cell protein analysis with Evosep One2021Jiao Ma & Anders GiessingAstraZeneca, Novozymes, ,

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Covid-19 research with Evosep One2021Angela McArdle & Mathias TrostCedars Sinai, Newcastle University

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A beginner’s guide to Evosep2021Nicolai Bache, Alexey Chernobrovkin & Raja NirojogiEvosep, Pelago Bioscience, University of Dundee

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Whisper is coming2021Evosep

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EVOSEP+2020Evosep

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Powerful pairing of technologies and analytical approaches2019Thomas AngelGlaxoSmithKline

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Whisper™ step-by-step guide2021Evosep

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SPIN – Species by Proteome Investigation2021Patrick L. Rüther, Immanuel M. Husic, Pernille Bangsgaard, Kristian M. Gregersen, Pernille Pantmann, Milena Carvalho, RitaM. Godinho, Lukas Friedl, Joao Cascalheira, Marie Louise S. Jørkov, Michael Benedetti, Jonathan Haws, Nuno Bicho, Frido Welker, EnricUniversity of Copenhagen, Denmark. University of Algarve, Portugal. University of Louisville, USA. University of North Carolina, USA. University of West Bohemia, Czech Republic. University of New Mexico, Albuquerque, USA. Museum Nordsjælland, Denmark. Roy, ,

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High-resolution longitudinal serum proteome trajectories in COVID-19 reveal patients-specific seroconversion2021Philipp E. Geyer, Florian M. Arend, Sophia Doll, Marie-Luise Louiset, Sebastian Virreira Winter, Johannes B. Müller-Reif, Furkan M. Torun, Michael Weigand, Peter Eichhorn, Mathias Bruegel, Maximilian T. Strauss, Lesca M. Holdt, Matthias Mann & Daniel TeupOmicEra Diagnostics GmbH, Germany. University Hospital, LMU Munich, Germany. University of Copenhagen, Denmark.

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60-spdbruker-timstof-pro
The Host Interactome of Spike Expands the Tropism of SARS-CoV-22021Casimir Bamberger, Sandra Pankow, Salvador Martínez-Bartolomé, Jolene Diedrich, Robin Park & John Yates IIIDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA

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30-spdbruker-timstof-pro
Molecular origin of blood-based infrared fingerprints2021Liudmila Voronina, Cristina Leonardo, Johannes B. Mueller-Reif, Philipp E. Geyer, Marinus Huber, Michael Trubetskov, Kosmas V. Kepesidis, Jürgen Behr, Matthias Mann, Ferenc Krausz & Mihaela ŽigmanDepartment of Physics, Ludwig Maximilian University of Munich, Germany. Max Planck Institute of Quantum Optics, Garching, Germany. Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry,Germany. Novo Nordisk Foundation Cent

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R1441G but not G201S Mutation Enhances LRRK2 Mediated Rab10 phosporylation in human Peripheral blood neutrophils2021Ying Fan, Raja S. Nirujogi, Alicia Garrido, Javier Ruiz Martínez, Alberto Bergareche-Yarza, Elisabet Mondragón Rezola, Ana Vinagre Aragón, Ioana Croitoru, Ana Gorostidi Pagola, Laura Paternain Markinez, Roy Alcalay, Richard A. Hickman, Jonas Duering, NeriUniversity of Dundee, UK. Hospital Clínic de Barcelona, Spain. Universitat de Barcelona, Spain. Biodonostia Health Research Institute, Spain. Columbia University Medical Center, New York, USA. The Michael J Fox Foundation for Parkinson's Research, New Yor

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60-spdthermo-q-exactive-hf-x
Spatial-proteomics reveal in-vivo phospho-signaling dynamics at subcellular resolution2021Ana Martinez-Val, Dorte B. Bekker-Jensen, Sophia Steigerwald, Adi Mehta, Trung Tran, Krzysztof Sikorski, Estefanía Torres-Vega, Ewa Kwasniewicz, Sólveig Hlín Brynjólfsdóttir, Lisa B. Frankel, Rasmus Kjøbsted, Nicolai Krogh, Alicia Lundby, Simon Bekker-JenUniversity of Copenhagen, Denmark. Oslo University Hospital, Norway.

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Basement membrane stiffness determines metastases formation2021Raphael Reuten, Sina Zendehroud, Monica Nicolau, Lutz Fleischhauer, Anu Laitala, Stefanie Kiderlen, Denise Nikodemus, Lena Wullkopf, Sebastian Rune Nielsen, Sarah McNeilly, Carina Prein, Maria Rafaeva, Erwin M. Schoof, Benjamin Furtwängler, Bo T. Porse, HUniversity of Copenhagen, Denmark. Freie Universität Berlin, Germany. Munich University of Applied Sciences, Germany. Center for Nanoscience-CeNS, Germany. University of Glasgow, UK. Technical University of Denmark, Denmark. KU Leuven, Belgium. Queen Mary

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30-spdthermo-orbitrap-exploris-480
Crystal structure of bacterial cytotoxic necrotizing factor CNFY reveals molecular building blocks for intoxication2021Paweena Chaoprasid, Peer Lukat, Sabrina Mühlen, Thomas Heidler, Emerich‐Mihai Gazdag, Shuangshuang Dong, Wenjie Bi, Christian Rüter, Marco Kirchenwitz, Anika Steffen, Lothar Jänsch, Theresia E B Stradal, Petra Dersch & Wulf BlankenfeldtUniversity of Münster, Germany. Helmholtz Centre for Infection Research, Germany. Deutsches Zentrum für Infektionsforschung, Germany. Technische Universität Braunschweig, Germany.

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Interactions of Viral Proteins from Pathogenic and Low or Non-Pathogenic Orthohantaviruses with Human Type I Interferon Signaling2021Giulia Gallo, Grégory Caignard, Karine Badonnel, Guillaume Chevreux, Samuel Terrier, Agnieszka Szemiel, Gleyder Roman-Sosa, Florian Binder, Quan Gu, Ana Da Silva Filipe, Rainer G. Ulrich, Alain Kohl, Damien Vitour, Noël Tordo & Myriam ErmonvalInstitut Pasteur, France. Ecole Doctorale Complexité du Vivant, France. UMR 1161 Virologie, France. BREED, INRAE, Université Paris-Saclay, France. Université de Paris, France. MRC-University of Glasgow Centre for Virus Research, UK. Institute of Novel and

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30-spdthermo-orbitrap-fusion
Fluvastatin mitigates SARS-CoV-2 infection in human lung cells2020Francisco J. Zapatero-Belinchón, Rebecca Moeller, Lisa Lasswitz, Marco van Ham, Miriam Becker, Graham Brogden, Ebba Rosendal, Wenjie Bi, Belén Carriquí, Koushikul Islam, Annasara Lenman, Antonia P. Gunesch, Jared Kirui, Thomas Pietschmann, Anna K Överby,Medical School Hannover, Germany. Helmholtz Centre for Infection Research, Germany. University of Veterinary Medicine Hannover, Germany. Umeå University, Sweden. German Centre for Infection Research (DZIF), Germany.

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ABPP-HT – high-throughput activity-based profiling of deubiquitylating enzyme inhibitors in a cellular context2020Hannah Jones, Raphael Heilig, Roman Fischer, Benedikt M Kessler & Adan Pinto-FernandezUniversity of Oxford, United Kingdom.

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100-spdbruker-timstof-pro
Seroconversion stages COVID19 into distinct pathophysiological states2020Matthew D. Galbraith, Kohl T. Kinning, Kelly D. Sullivan, Ryan Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P. Smith, Ross E. Granrath, Jessica Shaw, Monika Dzieciatkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. HUniversity of Colorado, United States.

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30-spdbruker-timstof-pro
Deciphering the LRRK code: LRRK1 and LRRK2 phosphorylate distinct Rab proteins and are regulated by diverse mechanisms2020Asad U. Malik, Athanasios Karapetsas, Raja S. Nirujogi, Sebastian Mathea, Prosenjit Pal, Pawel Lis, Matthew Taylor, Elena Purlyte, Robert Gourlay, Mark Dorward, Simone Weidlich, Rachel Toth, Nicole K. Polinski, Stefan Knapp, Francesca Tonelli & Dario R AlUniversity of Dundee, United Kingdom. Johann Wolfgang Goethe University, Germany. Michael J Fox Foundation for Parkinson’s Research, United States.

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60-spdthermo-q-exactive-hf-x
Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sites2020Raja S Nirujogi, Francesca Tonelli, Matthew Taylor, Pawel Lis, Alexander Zimprich, Esther Sammler & Dario R AlessiUniversity of Dundee, United States. Medical University of Vienna, Austria.,

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30-spd 60-spdthermo-orbitrap-exploris-480
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition2020Florian Meier, Andreas-David Brunner, Max Frank, Annie Ha, Isabell Bludau, Eugenia Voytik, Stephanie Kaspar-Schoenefeld, Markus Lubeck, Oliver Raether, Nicolai Bache, Ruedi Aebersold, Ben C. Collins, Hannes L. Röst & Matthias MannMax Planck Institute of Biochemistry, Martinsried, Germany. Bruker Daltonik, Germany. ETH Zürich, Switzerland. University of Belfast, United Kingdom. University of Toronto, Canada., ,

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High throughput proteome and phosphorpoteome sample processing coupled to fast gradient DIA2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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Peptidomic analysis of urine from youths with early type 1 diabetes reveals novel bioactivity of uromodulin peptides in vitro2019SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada

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60-spdthermo-q-exactive-hf-x
Tech note: Evosep One: A gradient off-set focusing HPLC instrument for robust and high throughput proteomics2017

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Evosep One Field Test at the Max-Planck Institute of Biochemistry2017

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Gradient off-set focusing HPLC insturment for robust and high throughput clinical proteomics2017

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Sample loading protocol for Evotips2022

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Introducing the Evosep One – Instrument Overview2017

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Optimizing data processing parameters for samples acquired on instruments using Advanced Peak Determination2018Thermo Fisher Scientific, United States

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New Orbitrap Exploris 480 Mass Spectrometer Coupled with Evosep One2020Thermo Fisher Scientific, United States, ,

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Development of a robust and reprodusible method for detection of citrullination in complex samples2018University of Southern Denmark, Denmark

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A tale of two tails – efficient profiling of protein degraders by specific functional and target engagement readouts2020Pelago Biosciences, Sweden

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How to get Speed and Depth in yout Host Cell Protein2018Bruker Daltonics, Germany

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A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-Robust Proteomics2018Max Planck Institute of Biochemistry, Martinsried Germany and Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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60-spdthermo-q-exactive-hf-x
Online parallel accumulation – serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer2018Max Planck Institute of Biochemistry, Martinsried and Bruker Daltonics, Germany

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Robust and Reprodusible Protein Quantification in Plasma Using the Evosep One and the Agilent 6495 Triple Quadrupole LC/MS2020Agilent Technologies, United States

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High dynamic range proteome analysis with BoxCar DIA and super-resolution Orbitrap mass spectrometry2020Max Planck Institute of Biochemistry, Martinsried, Germany,

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Clinical proteomics2018Max Planck Institute of Biochemistry, Martinsried, Germany

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Development of a Novel LC Concept for Clinical Proteomics2018Max Planck Institute of Biochemistry, Martinsried and Bruker Daltonics, Germany

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Increasing proteome coverage using cysteine-specific DIA Mass spectrometry – Cys-DIA2020University of Southern Denmark

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A network of RNA-binding proteins controls translation efficiency to activate anaerobic metabolism2020SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada

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Improving proteome coverage and peptide identification rates in short LC gradients2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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High-throughput proteomics with Evosep One2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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Rapid proteome analyses using the Evosep One2018Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Targeted assay development for quantifying protein half-life over a range of mouse tissues2019Glaxo Smith Kline, Unites States

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300-spd
Sensitive, Rapid, Robust and Reproducible Workflow for Host Cell Protein Profiling in Biopharmaceutical Process Development2020Glaxo Smith Kline, Unites States,

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Using Artificial Intelligence on Ultrafast LC-MSMS-DIA runs for Bacterial Identification in Urine2019CHU Québec Université Laval Research Center, Canada, ,

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Characterization of glutathione proteome in CHO cells and its relationship with productivity and cholesterol synthesis2020Technical University of Denmark

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High-throughput 4D-Proteomics – Application of dia-PASEF® and the Evosep One for short gradients2020Bruker Daltonics, Germany, , ,

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MaxQuant software for ion moiblity enhanced shotgun proteomics2020Bruker Daltonics, Germany

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Plasma proteomics goes high-throughput – timsTOF Pro with PASEF and 4D feature alignment to quantify 500 plasma proteins in 11.5 min2019Bruker Daltonics, Germany

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Fast and reproducible phosphoproteomics using MagReSyn® Amine and Tim-IMAC HP magnetic beads and the Evosep One2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Consistency, consistency – Automated Sample Prep for Translational Proteomics2020Thermo Fisher Scientific, United States

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An Ultra High-Throughput Plasma Protein Profiling (uHTPPP) Workflow Using a Modified Quadrupole-Orbitrap Mass Spectrometer2020Thermo Fisher Scientific, United States,

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Scalable and Automated Plasma Workflow Based on the Thermo Scientific Q Exactive HF-X MS Platform2019Thermo Fisher Scientific, United States, ,

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Advancing Interactomics Workflows with 4D-Proteomics on the timsTOF Pro2020Max Planck Institute of Biochemistry, Martinsried, Germany

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Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites2019Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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timsTOF Pro with PASEF and Evosep One: Maximizing throughput, robustness and analytical depth for shotgun proteomics2018Bruker Daltonics, Germany, ,

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Evidence of Structural Protein Damage and Membrane Lipid Remodeling in Red Blood Cells from COVID-19 Patients2020University of Colorado, United States

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Development of mass spectrometry-based targeted assay for direct detection of novel SARS-CoV-2 coronavirus from clinical specimens2020Mayo Clinic Rochester, United States,

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Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV2020Max Planck Institute of Biochemistry, Martinsried, Germany,

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Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level2020University of Colorado, US

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A paired liver biopsy and plasma proteomics study reveals circulating biomarkers for alcohol-related liver disease2020Max Planck Institute of Biochemistry, Martinsried, Germany and Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Evosep One Enables Robust Deep Proteome Coverage Using Tandem Mass Tags While Significantly Reducing Instrument Time2019SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada,

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30-spd 60-spdthermo-orbitrap-fusion-lumos
Increasing Throughput: From Pre-Clinical Models To Protein Complexes2019ETH Zürich, Switzerland

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In-Depth Characterization of Staurosporine Induced Proteome Thermal Stability Changes2020Pelago Biosciences, Sweden

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Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles2020University of Southern Denmark

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A Compact Quadrupole-Orbitrap Mass Spectrometer With Faims Interface Improves Proteome Coverage In Short Lc Gradients2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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Covalent Protein Painting Reveals Structural Changes In The Proteome In Alzheimer Disease2020Scripps Research Institute, United States

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Advanced Host Cell Protein (Hcp) Analysis With Tims Qtof Ms Powers Biopharmaceutical Development 2019Bruker Daltonics, Germany

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Accurate Detection Of The Four Most Prevalent Carbapenemases In E. Coli And K. Pneumoniae By High-Resolution Mass Spectrometry2019Erasmus MC, The Netherlands

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Study: Increased De Novo Protein Sequencing Coverage With Optimal Protease Cocktail2019Rapid Novor, Canada

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High-Throughput Proteomics Quantification Enabled by Fast LC Separation and Advanced PRM Acquisition2018Thermo Fisher Scientific, United States, ,

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Fast Confirmatory Analysis of Rhuepos in Plasma for Horseracing Doping Control2019Le Laboratoire des Courses Hippiques (LCH), France

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