LITERATURE ROOM

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Here you can find the latest publications from our users and collaboration partners and also discover older publications. Use the search function to explore our Literature Room or get inspiration from the tags and categories.

TitleMaterialYearAuthorsOrganizationEvosep methodMS instrumentationLearn Morehf:tax:evosep_methodhf:tax:ms_vendor
Proteomic characteristics and diagnostic potential of exhaled breath particles in patients with COVID-192023Gabriel Hirdman, Embla Bodén, Sven Kjellström, Carl‑Johan Fraenkel, Franziska Olm, Oskar Hallgren and Sandra LindstedtLund University, Department of Infection Control Region Skåne and Skåne University Hospital

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60-spdbruker-timstof-pro
ATP synthase interactome analysis identifies a new subunit l as a modulator of permeability transition pore in yeast2023Chiranjit Panja, Aneta Wiesyk, Katarzyna Niedźwiecka, Emilia Baranowska, Roza KucharczykPolish Academy of Sciences

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thermo-orbitrap-exploris-480
Characterization of a highly conserved MUC5B-degrading protease, MdpL, from Limosilactobacillus fermentum2023Fredrik Leo, Gunnel Svensäter, Rolf Lood, Claes WickströmMalmö University, Genovis AB, Lund University

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thermo-q-exactive-hf-x
Vacuum Insulated Probe Heated ElectroSpray Ionization source (VIP-HESI) enhances micro flow rate chromatography signals in the Bruker timsTOF mass spectrometer2023Mukul K. Midha, Charu Kapil, Michal Maes, David H. Baxter, Seamus R. Morrone, Timothy J. Prokop & Robert L. MoritzInstitute for Systems Biology, , , ,

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100-spd 200-spd 30-spd 60-spd extended-methodbruker-timstof-pro
A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics2023Thierry M. Nordmann, Lisa Schweizer, Andreas Metousis, Marvin Thielert, EdwinRodriguez, Lise Mette Rahbek-Gjerdrum, Pia-Charlotte Stadler, Michael Bzorek, Andreas Mund, Florian A. Rosenberger & Matthias MannMax Planck Institute of Biochemistry, Zealand University Hospital, University Hospital Munich & University of Copenhagen

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whisper-20spdbruker-timstof-scp
Proteomic analysis identifies dysregulated proteins and associated molecular pathways in a cohort of gallbladder cancer patients of African ancestry2023Pavan Baichan, Previn Naicker, Tanya Nadine Augustine, Martin Smith, Geofrey Candy, John Devar and Ekene Emmanuel NwekeUniversity of the Witwatersrand, Council for Scientifc and Industrial Research & Chris Hani-Baragwanath Academic Hospital

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60-spdsciex-tripletof-6600-ms-system
Label-free single cell proteomics utilizing ultrafast LC and MS instrumentation: A valuable complementary technique to multiplexing2023Manuel Matzinger, Rupert L. Mayer & Karl MechtlerVienna BioCenter,

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whisper-20spd whisper-40spd
Extracellular Vesicles Isolated from Plasma of Multiple Myeloma Patients Treated with Daratumumab Express CD38, PD-L1, and the Complement Inhibitory Proteins CD55 and CD592022Kieran Brennan, Katrine F. Iversen, Alfonso Blanco-Fernández, Thomas Lund, Torben Plesner and Margaret M. Mc GeeUniversity College Dublin, University of Southern Denmark & Odense University Hospital

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30-spdbruker-timstof-pro
RGS14 is neuroprotective against seizure-induced mitochondrial oxidative stress and pathology in hippocampus2023Nicholas H Harbin, Daniel J Lustberg, Cheyenne Hurst, Jean-Francois Pare, Kathryn M Crotty, Alaina L Waters, Samantha M Yeligar, Yoland Smith, Nicholas T Seyfried, David Weinshenker and John R HeplerEmory University School of Medicine

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extended-methodthermo-q-exactive-plus-hybrid-quadrupole-orbitrap
SENP2 knockdown in human adipocytes reduces glucose metabolism and lipid accumulation, while increases lipid oxidation2023Solveig A. Krapf, Jenny Lund, Hege G. Bakke, Tuula A. Nyman, Stefano Bartesaghi, Xiao-Rong Peng, Arild C. Rustan, G. Hege Thoresen and Eili T. KaseUniversity of Oslo, Oslo University Hospital & AstraZeneca

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extended-methodsciex-tripletof-6600-ms-system
Systematic Adaptation of Bacillus licheniformis to 2-Phenylethanol Stress2023Yangyang Zhan,Haixia Xu, Hween Tong Tan, Ying Swan Ho, Dongxiao Yang, Shuwen Chen, Dave Siak-Wei Ow, Xin Lv, Fang Wei, Xuezhi Bi and Shouwen ChenHubei University, Bioprocessing Technology Institute (BTI) & Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences

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30-spdsciex-tripletof-6600-ms-system
A chemoproteomic platform for reactive fragment profiling against the deubiquitinases2023Rosa Cookson, Aini Vuorinen, Jonathan Pettinger, Cassandra R. Kennedy, Joanna M. Kirkpatrick, Rachel E. Peltier-Heap, Andrew Powell, Ambrosius P. Snijders, Mark Skehel, David House, Katrin Rittinger and Jacob T. BushGSK & The Francis Crick Institute,

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30-spd 60-spdthermo-orbitrap-fusion-lumos
BRM Complex in Arabidopsis Adopts ncBAF-like Composition and Requires BRD Subunits for Assembly and Stability2023Paulina Stachula, Katarzyna Kapela, Ewelina Malecka, Kamila Jaronczyk, Jacek Patryn, Nina Siwirykow, Maria Bucholc, Malgorzata Marczak, Maciej Kotlinski and Rafal ArchackiUniversity of Warsaw & Institute of Biochemistry and Biophysics PAS

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extended-methodthermo-orbitrap-exploris-480
Exploiting Multi-Omics Profiling and Systems Biology to Investigate Functions of TOMM342023Ekaterina V. Poverennaya, Mikhail A. Pyatnitskiy, Georgii V. Dolgalev, Viktoria A. Arzumanian, Olga I. Kiseleva, Ilya Yu. Kurbatov, Leonid K. Kurbatov, Igor V. Vakhrushev, Daniil D. Romashin, Yan S. Kim and Elena A. PonomarenkoInstitute of Biomedical Chemistry Moscow & Faculty Of Computer Science & National Research University Higher School of Economics Moscow

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30-spdthermo-q-exactive
β-oxidation–polyhydroxyalkanoates synthesis relationship in Pseudomonas putida KT2440 revisited2023Si Liu, Tanja Narancic, Jia‑Lynn Tham & Kevin E. O’ConnorUniversity College Dublin

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30-spdtimstof-pro
Unique DUOX2+ACE2+ small cholangiocytes are pathogenic targets for primary biliary cholangitis2023Xi Li, Yan Li, Jintao Xiao, Huiwen Wang, Yan Guo, Xiuru Mao, Pan Shi, Yanliang Hou, Xiaoxun Zhang, Nan Zhao, Minghua Zheng, Yonghong He, Jingjing Ding, Ya Tan, Min Liao, Ling Li, Ying Peng, Xuan Li, Qiong Pan, Qiaoling Xie, Qiao Li, Jianwei Li, Ying Li, ZDaping Hospital, Xiangya Hospital, Central South University, the First Affiliated Hospital of Wenzhou Medical University, ale University School of Medicine,

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bruker-timstof
Extending the Range of SLIM-Labeling Applications: From Human Cell Lines in Culture to Caenorhabditis elegans Whole-Organism Labeling2023Laurent Lignieres, Nicolas Sénécaut, Tien Dang, Laura Bellutti, Marion Hamon, Samuel Terrier, Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, René-Marc Mege, Julien Dumont, and Jean-Michel CamadroUniversité Paris Cité, Institut de Biologie Physico-Chimique, Institut de Biologie Physico-Chimique Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, René-Marc Mege, ̀ Julien Dumont,Institut de Biologie Physico-Chimique, Institut de Biologie Intégra

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30-spdthermo-orbitrap-fusion
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer2023Antonela Merlotti, Benjamin Sadacca, Yago A. Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira,Université Paris Sciences et Lettres, Laboratory of Clinical immunology, Institute Mutualiste Montsouris, Dana-Farber Cancer Institute, Institut d’Investigacions Biomèdiques de Barcelona-CSIC, Dana-Farber Cancer Institute

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thermo-q-exactive
Quantitative multi-organ proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation2023Lisa Schweizer, Tina Schaller, Maximilian Zwiebel, Özge Karayel, Johannes B. Müller-Reif, Wen-Feng Zeng, Sebastian Dintner, Klaus Hirschbühl, Bruno Märkl, Rainer Claus, Matthias MannMax-Planck Institute of Biochemistry, University Medical Center Augsburg,

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30-spdthermo-orbitrap-exploris-480
PRMT5-mediated regulatory arginine methylation of RIPK32023Chanchal Chauhan, Ana Martinez-Val, Rainer Niedenthal, Jesper Velgaard Olsen, Alexey Kotlyarov, Simon Bekker-Jensen, Matthias Gaestel & Manoj B. MenonHannover Medical School, University of Copenhagen, Indian Institute of Technology Delhi

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60-spdthermo-orbitrap-exploris-480
Identification of Highly Sensitive Pleural Effusion Protein Biomarkers for Malignant Pleural Mesothelioma by Affinity-Based Quantitative Proteomics2023Nicolai B. Palstrøm, Martin Overgaard, Peter Licht , Hans C. BeckOdense University Hospital, University of Southern Denmark,

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60-spdthermo-altis-triple-quadrupole
Differential proteomic profile of lumbar and ventricular cerebrospinal fluid2023Nina Rostgaard, Markus Harboe Olsen, Maud Ottenheijm, Lylia Drici, Anja Hviid Simonsen, Peter Plomgaard, Hanne Gredal, Helle Harding Poulsen, Henrik Zetterberg, Kaj Blennow, Steen Gregers Hasselbalch, Nanna MacAulay, Marianne JuhlerCopenhagen University Hospital, University of Copenhagen, University of Gothenburg,

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60-spdthermo-orbitrap-exploris-480
Recent advances in the field of single-cell proteomics2023Valdemaras Petrosius and Erwin M. SchoofTechnical University of Denmark,

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whisper-20spd whisper-40spd
Comparative proteome and transcriptome analyses of the response of postharvest pears to Penicillium expansum infection2023Meiqiu Xu, Esa Abiso Godana, Solairaj Dhanasekaran, Xiaoyun Zhang, Qiya Yang, Lina Zhao and Hongyin ZhangJiangsu University, Luoyang Normal University

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timstof-pro-2
Chromatographic separation of peptides and proteins for characterization of proteomes2022Yu Liang, Lihua Zhang and Yukui ZhangChinese Academy of Science, ,

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100-spd 200-spd 60-spdthermo-orbitrap-exploris-480
Insight into the antibacterial mechanism of Cuenriched sol–gel coatings employing proteomics2022Francisco Romero-Gavilán, Iñaki García-Arnáez, Andreia Cerqueira, Loredana Scalschi, Begonya Vicedo, Alejandro Villagrasa, Raúl Izquierdo, Mikel Azkargorta, Félix Elortza, Mariló Gurruchaga, Isabel Goñi and Julio SuayUniversitat Jaume I, Universidad del País Vasco, CIC bioGUNE

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timstof-pro
Proteomic evaluation of human osteoblast responses to titanium implants over time2022Francisco Romero-Gavilán, Andreia Cerqueira, Iñaki García-Arnáez, Mikel Azkargorta, Félix Elortza, Marilo Gurruchaga, Isabel Goñi and Julio SuayUniversitat Jaume I, Universidad del País Vasco, CIC bioGUNE

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30-spdtimstof-pro
A targeted multiplex mass spectrometry method for quantitation of abundant matrix and cellular proteins in formalin-fixed paraffin embedded arterial tissue2022Anne-Sofie Faarvang Thorsen, Lars Peter Schødt Riber, Lars Melholt Rasmussen and Martin OvergaardOdense University Hospital. University of Southern Denmark. Steno Diabetes Center Odense.

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60-spdthermo-altis-triple-quadrupole
Hybrid-DIA: Intelligent Data Acquisition for Simultaneous Targeted and Discovery Phosphoproteomics in Single Spheroids2022Ana Martínez-Val, Kyle Fort, Claire Koenig, Leander Van der Hoeven, Giulia Franciosa, Thomas Moehring , Yasushi Ishihama, Yu-ju Chen, Alexander Makarov, Yue Xuan and Jesper V. OlsenNovo Nordisk Foundation Center for Protein Research, University of Copenhagen. Thermo Fisher Scientific. Kyoto University. Academia Sinica

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whisper-40spdthermo-orbitrap-exploris-480
MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer’s Biomarker Data2022Frank Koopmans, Ka Wan Li, Remco V. Klaassen, and August B. SmitVU University

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30-spdtimstof-pro
Ultra-high sensitivity for targeted clinical proteomics using Evosep-MRM2022Angela McArdle, Dorte B. Bekker-Jensen, Bharath Kumar Raghuraman, Nicolai BacheEvosep Biosystems

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whisperagilent-6495-triple-quadrupole
A complete and automated sample preparation strategy forhigh-throughput and standardized proteomics, applied to a clinical cohort of patient plasma samples2022Dorte B. Bekker-Jensen, Florian Harking, Magnus Huusfeldt, Ole Østergaard, Lasse Falkenby, Line Vinderslev Iversen, Jakob Bunkenborg, Angie McArdle, Ole B. Hørning, Nicolai Bache, Jesper V. OlsenEvosep Biosystems, University of Copenhagen, Statens Serum Institut, Bispebjerg University Hospital,,

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500-spd whisper-40spdbruker-timstof-pro
Pushing the boundaries for robust and high-throughput single cell analysis with Whisper Flow technology powered by dia-PASEF2022Dorte B. Bekker-Jensen, Christoph Krisp, David Hartlmayr, Anjali Seth, Ole B. Hørning, Moritz Heusel, Magnus Huusfeldt, Andreia Almeida, Markus Lubeck, Gary Kruppa, Jarrod Sandow, Nicolai BacheEvosep Biosystems, Bruker Daltonics GmBH & Co. KG, Cellenion, IonOpticks, Bruker s.r.o, Brno

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whisper-40spdbruker-timstof-scp
Proteomic profiling of cerebrospinal fluid in pediatric myelin oligodendrocyte glycoprotein antibody-associated disease2022Yi‑Long Wang, Meng‑Ying Zhu, Zhe‑Feng Yuan, Xiao‑Yan Ren, Xiao‑Tong Guo, Yi Hua, Lu Xu, Cong‑Ying Zhao, Li‑Hua Jiang, Xin Zhang, Guo‑Xia Sheng, Pei‑Fang Jiang, Zheng‑Yan Zhao, Feng GaoZhejiang University School of Medicine

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thermo-q-exactive
Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome2022Florian A. Rosenberger, Marvin Thielert, Maximilian T. Strauss, Constantin Ammar, Sophia C. Mädler, Lisa Schweizer, Andreas Metousis, Patricia Skowronek, Maria Wahle, Janine Gote-Schniering, Anna Semenova, Herbert B. Schiller, Edwin Rodriguez, Thierry M.Max Planck Institute of Biochemistry, Martinsried, Germany. Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark. Evosep Biosystems, Denmark. Bruker Daltonik, Germany and United States. Helmholtz Zentrum München, Germany.

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30-spdbruker-timstof-scp
A complete, automated Opentrons OT-2 loading protocol for simplified sample loading of Evotip Pure2022Evosep, ,

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100-spd 500-spd whisper-40spdbruker-timstof-pro
Rapid and robust PTM peptide mapping for biologics with the Evosep One and the SCIEX ZenoTOF 76002022Evosep, ,

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100-spd 300-spd 60-spdsciex-zenotof-7600
Pushing the boundaries for robust and high-throughput single cell analysis2022Evosep

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whisper-40spdbruker-timstof-scp
Temporal phosphoproteomics reveals WEE1-dependent control of 53BP1 pathway2022Valdemaras Petrosius, Jan Benada, Olaf Nielsen, Erwin Marten Schoof, Claus Storgaard SørensenUniversity of Copenhagen, Technical University of Denmark

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30-spdthermo-fisher-ultimate-3000
Robust dimethyl-based multiplex-DIA workflow doubles single-cell proteome depth via a reference channel2022Marvin Thielert, Corazon Ericka Mae Itang, Constantin Ammar, Florian A Schober, Isabell Bludau, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Fabian J Theis, Martin Steger, Matthias MannMax Planck Institute of Biochemistry, Boehringer Ingelheim Pharma GmbH & Co, German Research Center for Environmental Health, Technical University of Munich, NEOsphere Biotechnologies GmbH, University of Copenhagen

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whisper-40spdbruker-timstof-scp
Restoring cellular magnesium balance through Cyclin M4 protects against acetaminophen-induced liver damage2022Irene González-Recio, Jorge Simón, Naroa Goikoetxea-Usandizaga, Marina Serrano-Maciá, Maria Mercado-Gómez, Rubén Rodríguez-Agudo, Sofía Lachiondo Ortega, Clàudia Gil-Pitarch, Carmen Fernández-Rodríguez, Donatello Castellana, Maria U. Latasa, Leticia AbeciCIC bioGUNE, Universidad de Navarra, Marqués de Valdecilla University Hospital, McGill University, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), University of the Basque Country (UPV/EHU), Silence Therapeutic

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bruker-timstof-pro
Enhancing single-cell proteomics through tailored Data-Independent Acquisition and micropillar array-based chromatography2022Valdemaras Petrosius, Pedro Aragon-Fernandez, Nil Üresin, Teeradon Phlairaharn, Benjamin Furtwängler, Jeff op de Beeck, Simon Francis Thomsen, Ulrich auf dem Keller, Bo T. Porse, Erwin M. SchoofTechnical University of Denmark, University of Copenhagen

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whisper-20spdthermo-orbitrap-eclipse-tribid
Characterization of TGF-β signaling in a human organotypic skin model reveals that loss of TGF-βRII induces invasive tissue growth2022Zilu Ye, Gülcan Kilic, Sally Dabelsteen, Irina N. Marinova, Jens F. B. Thøfner, Ming Song, Asha M. Rudjord-Levann, Ieva Bagdonaite, Sergey Y. Vakhrushev, Cord H. Brakebusch, Jesper V. Olsen, Hans H. WandallUniversity of Copenhagen

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30-spdthermo-orbitrap-exploris-480
Two Subgroups within the GH43_36 α-l-Arabinofuranosidase Subfamily Hydrolyze Arabinosyl from Either Mono-or Disubstituted Xylosyl Units in Wheat Arabinoxylan2022Kai P. Leschonski, Svend G. Kaasgaard,Nikolaj Spodsberg, Kristian B. R. M. Krogh, Mirjam A. KabelNovozymes A/S, Wageningen University

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bruker-timstof-pro
Plasma proteomic profling in postural orthostatic tachycardia syndrome (POTS) reveals new disease pathways2022Madeleine Johansson, HongYan, Charlotte Welinder, ÁkosVégvári, Viktor Hamrefors, Magnus Bäck, Richard Sutton, Artur FedorowskiSkåne University Hospital, Swedish National Infrastructure for Biological Mass Spectrometry, Karolinska Institutet, Lund University,

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60-spdbruker-timstof-pro
Programmed death ligand 1 intracellular interactions with STAT3 and focal adhesion protein Paxillin facilitate lymphatic endothelial cell remodeling2022Johnathon B. Schafer, Erin D. Lucas, PhD, Monika Dzieciettkowska, Tadg Forward, Beth A. Jirón TamburiniUniversity of Colorado School of Medicine,

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bruker-timstof-pro
Correlation between biological responses in vitro and in vivo to Ca-doped sol-gel coatings assessed using proteomic analysis2022I. García-Arnáeza, F. Romero-Gavilán, A. Cerqueira, F. Elortza, M. Azkargorta, F. Muñoz, M. Mata, J.J. Martín de Llano, J. Suay, M. Gurruchaga, I.GoñiaUniversity of the Basque Country, Universitat Jaume, Basque Research and Technology Alliance, Campus Universitario, iBoneLab SL, University of Valencia, Research Institute of the University Clinical Hospital of Valencia

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30-spdbruker-timstof-pro
Slice-PASEF: fragmenting all ions for maximum sensitivity in proteomics2022Lukasz Szyrwiel, Ludwig Sinn, Markus Ralser, Vadim DemichevUniversitätsmedizin Berlin, University of Oxford

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200-spdbruker-timstof-pro
Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition2022Patricia Skowronek, Florian Krohs, Markus Lubeck, Georg Wallmann, Ericka Itang, Polina Koval, Maria Wahle, Marvin Thielert, Florian Meier, Sander Willems, Oliver Raether, Matthias MannMax Planck Institute of Biochemistry, Bruker Daltonics GmbH & Co. KG Bremen, Kyiv Academic University, Jena University Hospital, Bruker Belgium, NNF Center for Protein Research,,

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100-spd 60-spdbruker-timstof-pro
Enhanced drug delivery by a prodrug approach effectively relieves neuroinflammation in mice2022Ahmed Montaser, Janita Kuiri, Teemu Natunen, Pavel Hruska, David Potesil, Seppo Auriola, Mikko Hiltunen, Tetsuya Terasaki, Marko Lehtonen, Aaro Jalkanen, Kristiina M HuttunenUniversity of Eastern Finland, Masaryk University, Tohoku University,

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Kinase Inhibitor Pulldown Assay (KiP) for Clinical Proteomics2022Alexander B Saltzman, Doug W Chan, Matthew V Holt, Junkai Wang, Eric J Jaehnig, Meenakshi Anurag, Purba Singh, Anna Malovannaya, Beom-Jun Kim, Matthew J EllisBaylor College of Medicine, MD Anderson Cancer Center, AstraZeneca,

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30-spdthermo-orbitrap-exploris-480
On the potential of micro-flow LC-MS/MS in proteomics2022Yangyang Bian, Chunli Gao, Bernhard Kuster,Northwest University, Technical University of Munich

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300-spdab-sciex-tripletof-6600
Autophagy regulates neuronal excitability by controlling cAMP/protein kinase A signaling at the synapse2022Melina Overhoff, Frederik Tellkamp, Simon Hess, Marianna Tolve, Janine Tutas, Marcel Faerfers, Lotte Ickert, Milad Mohammadi, Elodie De Bruyckere, Emmanouela Kallergi, Andrea Delle Vedove, Vassiliki Nikoletopoulou, Brunhilde Wirth, Joerg Isensee, Tim HuchUniversity of Cologne, University of Lausanne, Leibniz Institute for Molecular Pharmacology, German Center for Neurodegenerative Diseases

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whisper-20spdthermo-q-exactive-480
A Parallelization Strategy for the Time Efficient Analysis of Thousands of LC/MS Runs in High-Performance Computing Environment2022Patrick van Zalm, Arthur Viodé, Kinga Smolen, Benoit Fatou, Arash Nemati Hayati, Christoph N. Schlaffner, Ofer Levy, Judith Steen, Hanno SteenBoston Children's Hospital

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bruker-timstof-pro
2-O-Methylation of the second transcribed nucleotide within the mRNA 5 cap impacts the protein production level in a cell-specific manner and contributes to RNA immune evasion2022Karolina Drazkowska, Rafal Tomecki, Marcin Warminski, Natalia Baran, Dominik Cysewski, Anaıs Depaix, Renata Kasprzyk, Joanna Kowalska, Jacek Jemielity, Pawel J. SikorskiUniversity of Warsaw, Polish Academy of Sciences, Medical University of Bialystok

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30-spdthermo-orbitrap-exploris-480
Common variable immunodeficiency in two kindreds with heterogeneous phenotypes caused by novel heterozygous NFKB1 mutations2022Frederik Staels, Kerstin De Keukeleere, Matias Kinnunen, Salla Keskitalo, Flaminia Lorenzetti, Michiel Vanmeert, Teresa Prezzemolo, Emanuela Pasciuto, Eveline Lescrinier, Xavier Bossuyt, Margaux Gerbaux, Mathijs Willemsen, Julika Neumann, Sien Van Loo, AnKU Leuven, University of Helsinki, University Hospitals Leuven, Babraham Institute

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60-spdbruker-timstof-pro
SARS-CoV-2 Production, Purification Methods and UV Inactivation for Proteomics and Structural Studies Inactivation for Proteomics and Structural Studies2022Zlatka Plavec, Aušra Domanska, Xiaonan Liu, Pia Laine, Lars Paulin, Markku Varjosalo, Petri Auvinen, Sharon G. Wolf, Maria Anastasina, Sarah J. ButcherMolecular and Integrative Biosciences Research Programme, University of Helsinki, Weizmann Institute pf Science,

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60-spdbruker-timstof-pro
Optimizing data points per protein increases protein identifications while maintaining quantitative precision in short gradient data-independent acquisition proteomics2022Joerg Doellinger, Christian Blumenscheit, Andy Schneider, Peter LaschRobert Koch-Institute

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60-spdbruker-timstof-pro
PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074, and THR1075) within the COR GTPase domain2022Asad U. Malik, Athanasios Karapetsas, Raja S. Nirujogi, Sebastian Mathea, Prosenjit Pal, Pawel Lis, Matthew Taylor, Elena Purlyte, Robert Gourlay, Mark Dorward, Simone Weidlich, Rachel Toth, Nicole K. Polinski, Stefan Knapp, Francesca Tonelli & Dario R AlUniversity of Dundee, Collaborative Research Network, Johann Wolfgang Goethe University, AB Sciex

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30-spdthermo-orbitrap-exploris-240
Endosomal Chemokine Receptor Signalosomes Regulate Central Mechanisms Underlying Cell Migration2022Hyunggu Hahn, Carole Daly, John Little IV, Nicole A. Perry Hauser, Asuka Inoue, Bianca Plouffe, Alex R. B. ThomsenNew York University College of Dentistry, Queen’s University Belfast, Columbia University Vagelos College of Physicians and Surgeons, Tohoku University

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thermo-q-exactive-hf-x
Rapid profiling of protein complex re-organization in perturbed systems2022Isabell Blau, Charlotte Nicod, Claudia Martelli, Peng Xue, Moritz Heusel Andreas Fossati, Federico Uliana, Fabian Frommelt, Ruedi Aabersold, Ben C. CollinsETH Zürich, Max Planck Institute of Biochemistry, Lund University, University of California San Francisco, J. David Gladstone Institutes, Queen's University of Belfast

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60-spdab-sciex-tripletof-6600
Cellular proteomic profiling using proximity labelling by TurboID-NES in microglial and neuronal cell lines2022Sydney Sunna, Christine Bowen, Hollis Zeng, Struti Rayaprolu, Prateek Kumar, Pritha Bagchi, Duc M. Duong, Sara Bitarafan, Aditya Natu, Levi Wood, Nicholas T. Seyfried, Srikant RangarajuEmory University, Georgia Institute of Technology

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30-spdthermo-q-exactive
Structural studies reveal that endosomal cations promote formation of 2 infectious CVA9 A particles, facilitating RNA and VP4 release.2022Aušra Domanska, Zlatka Plavec, Visa Ruokolainen, Benita Löflund, Varpu Marjomäki, Sarah J ButcherFaculty of Biological and Environmental Sciences, Molecular and Integrative Bioscience Research Programme, and Helsinki Institute of Life Sciences-Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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60-spdbruker-timstof-pro
Extended detection of anabolics misuse in high-throughput doping controls with the Evosep One2022Evosep

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100-spd
The spike of SARS-CoV-2 promotes metabolic rewiring in hepatocytes2022Maria Mercado-Gómez, Endika Prieto-Fernández, Naroa Goikoetxea-Usandizaga, Laura Vila-Vecilla, Mikel Azkargorta. Miren Bravo, Marina Serrano-Maciá, Leire Egia-Mendikute, Rubén Rodríguez-Agudo, Sofia Lachiondo-Ortega, So Young Lee, Alvaro Eguileor GinéCIC bioGUNE, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas, IIS Hospital La Fe, University of Valencia, Basque Foundation for Science, University of the Basque Country, Centro de Investigación Biomédica En Red de Enferme

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30-spdbruker-timstof-pro
Biomarkers in Neurodegenerative Diseases: Proteomics Spotlight on ALS and Parkinson’s Disease2022Rekha Raghunathan, Kathleen Turajane and Li Chin WongInternational Journal of Molecular Sciences

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Coordinated control of the ADP-heptose/ALPK1 signalling network by the E3 ligases TRAF6, TRAF2/c-IAP1 and LUBAC.2022Tom Snelling, Natalia Shpiro, Robert Gourlay, Frederic Lamoliatte and Philip CohenUniversity of Dundee

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thermo-orbitrap-exploris-240
Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells2022Camille Ternet, Philipp Junk, Thomas Sevrin, Simona Catozzi, Giorgio Oliviero, Kieran Wynne and Christina KielUniversity College Dublin, University of Pavia

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bruker-timstof-pro
The addition of FAIMS increases targeted proteomics sensitivity from FFPE tumor biopsies2022Steve Sweet, David Chain, WenYu, Philip Martin, Marlon Rebelatto, Andrew Chambers, Fabiola Cecchi and Yeoun Jin KimAstraZeneca

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High-throughput mass spectrometry maps the sepsis plasma proteome and differences in response2022Yuxin Mi, Katie L Burnham, Philip D Charles, Raphael Heilig, Iolanda Vendrell, Justin Whalley, Hew D Torrance, David B Antcliffe, Shaun M May, Matt J Neville, Georgina Berridge. Paula Hutton, Cyndi Goh, Jayachandran Radhakrishnan, Alexey Nesvizhskii,University of Oxford, Wellcome Genome Campus, Imperial College London, Queen Mary University of London, NIHR Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, University of Michigan, Imperial College Healthcare NHS Trust

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Widespread hydroxylation of unstructured lysine-rich protein domains by JMJD62022Matthew E. Cockman, Yoichiro Sugimoto, Hamish B. Pegg, Norma Masson, Eidarus Salah, Anthony Tumber, Helen R. Flynn, Joanna M. Kirkpatrick, Christopher J. Schofield and Peter J. RatcliffeFrancis Crick Institute

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High throughput and high confidence sequence variant analysis in therapeutic antibodies using Evosep One liquid chromatography tandem mass spectrometry with synthetic heavy peptides2022Tyler Greer, Reid O'Brien Johnson, Song Nie, Milos Cejkov, Xiaojing Zheng & Ning LiRegeneron Pharmaceuticals Inc

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Osteocytes Serve as a Reservoir for Intracellular Persisting Staphylococcus aureus Due to the Lack of Defense Mechanisms2022Marina Garcia-Moreno, Paul M. Jordan, Kerstin Günther, Therese Dau, Christian Fritzsch, Monika Vermes, Astrid Schoppa, Anita Ignatius, Britt Wildemann, Oliver Werz, Bettina Löffler & Lorena TuchscherrJena University Hospital, Friedrich Schiller University Jena, Leibniz Institute on Aging & University Medical Center Ulm

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Neddylation tunes peripheral blood mononuclear cells immune response in COVID-19 patients2022Marina Serrano-Maciá, Sofia Lachiondo-Ortega, Paula Iruzubieta, Naroa Goikoetxea-Usandizaga, Alexandre Bosch, Leire Egia-Mendikute, Borja Jiménez-Lasheras, Mikel Azkargorta, Félix Elortza, Diana Martinez-Redondo, Begoña Castro, Juan J. Lozano, Ruben NogueCIC bioGUNE-BRTA, IDIVAL, CIC bioGUNE, CIBEREHD, University of Santiago de Compostela-Instituto de Investigación Sanitaria, Centro de Investigación Biomédica en Red, GAIN, Universidad de Cantabria, Ikerbasque & Basque Foundation for Science

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T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles2022Pablo F. Céspedes, Ashwin Jainarayanan, Lola Fernández-Messina, Salvatore Valvo, David G. Saliba, Elke Kurz, Audun Kvalvaag, Lina Chen, Charity Ganskow, Huw Colin-York, Marco Fritzsche, Yanchun Peng, Tao Dong, Errin Johnson, Jesús A. Siller-Farfán, Omer DThe University of Oxford, Autónoma de Madrid, Centro Nacional de Investigaciones Cardiovasculares (CNIC), University of Oxford, Karolinska Institutet

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High-throughput quantitative proteomics using Zeno SWATH data-independent analysis (DIA) and the Evosep One system2022Ihor Batruch, Yves Le Blanc and Christie HunterSCIEX, , ,

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Rapid and in-depth coverage of the (phospho-)proteome with deep libraries and optimal window design for dia-PASEF2022Patricia Skowronek, Marvin Thielert, Eugenia Voytik, Maria C. Tanzer, Fynn M. Hansen, Sander Willems, Özge Karayel, Andreas-David Brunner, Florian Meier, Matthias MannMax Planck Institute of Biochemistry, Jena University Hospital, University of Copenhagen, ,

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Application of In-Cell Fast Photochemical Oxidation of Proteins for the Study of Organoids2022Raquel Shortt, Lisa M. JonesUniversity of Maryland, University of California

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Brain proteome profling implicates the complement and coagulation cascade in multiple system atrophy brain pathology2022Rasmus Rydbirk, Ole Østergaard, Jonas Folke, Casper Hempel, Brian DellaValle, Thomas L. Andresen, Annemette Løkkegaard, Anne‑Mette Hejl, Matthias Bode, Morten Blaabjerg, Mette Møller, Erik H. Danielsen, Lisette Salvesen, Charlotte C. Starhof, Sara BechCopenhagen University Hospital, University of Copenhagen, Technical University of Denmark, GLX Analytix ApS, Odense University Hospital, Aarhus University Hospital

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Noninvasive proteomic biomarkers for alcohol-related liver disease2022Lili Niu , Maja Thiele , Philipp E. Geyer, Ditlev Nytoft Rasmussen, Henry Emanuel Webel, Alberto Santos, Rajat Gupta, Florian Meier , Maximilian Strauss , Maria Kjaergaard , Katrine Lindvig, Suganya Jacobsen, Simon Rasmussen , Torben Hansen , Aleksander KUniversity of Copenhagen, Max Planck Institute of Biochemistry, Odense University Hospital, University of Southern Denmark, Jena University Hospital, University of Oxford, Pfizer Worldwide Research and Development

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Advances in data‐independent acquisition massspectrometry towards comprehensive digital proteomelandscape2022Reta Birhanu Kitata, Jhih‐Ci Yang, Yu‐Ju ChenAcademia Sinica, National Yang Ming Chiao Tung University, National Taiwan University

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Engineered SH2 Domains for Targeted Phosphoproteomics2022Gregory D. Martyn, Gianluca Veggiani, Ulrike Kusebauch, Seamus R. Morrone, Bradley P. Yates, Alex U. Singer, Jiefei Tong, Noah Manczyk, Gerald Gish, Zhi Sun, Igor Kurinov, Frank Sicheri, Michael F. Moran, Robert L. Moritz and Sachdev S. SidhuUniversity of Toronto, Institute for Systems Biology Washington, Hospital for Sick Children Toronto, Mount Sinai Hospital, Cornell University

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Proteomic phenotype of cerebral organoids derived from autism spectrum disorder patients reveal disrupted energy metabolism, cellular components, and biological processes2022Mirolyuba Ilieva, Blanca Irene Aldana, Kasper Tore Vinten, Sonja Hohmann, Thomas William Woofenden, Renate Lukjanska, Helle S Waagepetersen, Tanja Maria MichelUniversity of Southern Denmark, Odense University Hospital, Aalborg University, University of Copenhagen

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Pancreatic INS-1 β-Cell Response to Thapsigargin and Rotenone: A Comparative Proteomics Analysis Uncovers Key Pathways of β-Cell Dysfunction2022Mehari Muuz Weldemariam, Jongmin Woo & Qibin ZhangUniversity of North Carolina at Greensboro

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Proteomics of human biological fluids for biomarker discoveries: technical advances and recent applications2022Loïc Dayon, Ornella Cominetti & Michael AffolterProteomics, Bioanalytics Department, Nestlé Institute of Food Safety & Analytical Sciences, Institut des Sciences et Ingénierie Chimiques

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Evaluation of the Suitability of Dried Saliva Spots for In-Depth Proteome Analyses for Clinical Applications2022Hironori Sato, Daisuke Nakajima, Masaki Ishikawa, Ryo Konno, Ren Nakamura, Osamu Ohara, & Yusuke KawashimaDepartment of Applied Genomics, Kazusa DNA Research Institute, Department of Pediatrics, Graduate School of Medicine, Chiba University

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Inflammation-induced downregulation of succinate dehydrogenase regulates adrenocortical function2022Ivona Mateska, Anke Witt, Eman Hagag, Anupam Sinha, Canelif Yilmaz, Evangelia Thanou, Na Sun, Ourania Kolliniati, Maria Patschin, Heba Abdelmegeed, Holger Henneicke, Waldemar Kanczkowski, Ben Wielockx, Christos Tsatsanis, Andreas Dahl, Axel Walch, Ka WanTechnische Universität Dresden, Germany, Vrije Universiteit, Netherlands, Helmholtz Centrum München, Germany, University of Crete, Greece

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Zwitter-ionic monolith-based spintip column coupled with Evosep One liquid chromatography for high-throughput proteomic analysis2022Yiran Su, Xi Wang, Yun Yang, Lijun Yang, Ruilian Xu, Ruijun TianSouthern Univrsity of Science and Technology, China, Jinan University, China,

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Ultra sensitive and high throughput proteomics on the standardized Evosep One platform2021Jesper Olsen, Erwin M. SchoofUniversity of Copenhagen, Technical University of Denmark,

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A Non-Hazardous Deparaffinization Protocol Enables Quantitative Proteomics of Core Needle Biopsy-Sized Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Specimens2022Georgia Mitsa, Qianyu Guo, Christophe Goncalves, Samuel E J Preston, Vincent Lacasse, Adriana Aguilar-Mahecha, Naciba Benlimame, Mark Basik, Alan Spatz, Gerald Batist, Wilson H Miller Jr, Sonia V Del Rincon, René P Zahedi, Christoph H BorchersInternational Journal of Molecular Sciences

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Integrative analysis of non-small cell lung cancer patient-derived xenografts identifies distinct proteotypes associated with patient outcomes2022Shideh Mirhadi, Shirley Tam, Quan Li, Nadeem Moghal, Nhu-An Pham, Jiefei Tong, Brian J. Golbourn, Jonathan R. Krieger, Paul Taylor, Ming Li, Jessica Weiss, Sebastiao N. Martins-Filho ,Vibha Raghavan, Yasin Mamatjan, Aafaque A. Khan, Michael Cabanero, ShinNature Communications

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DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii2022Clara Navarrete, Benjamín J. Sánchez, Simonas Savickas, José Luis Martínez RuizDepartment of Biotechnology and Biomedicine,Technical University of Denmark

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DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes2022Anna Maria Sole Giordano, Marco Luciani, Francesca Gatto, Monah Abou Alezz, Chiara Beghè, Lucrezia Della Volpe, Alessandro Migliara, Sara Valsoni, Marco Genua, Monika Dzieciatkowska, Giacomo Frati, Julie Tahraoui-Bories, Silvia Clara Giliani, Simona OrcesJournal of Experimental Medicine

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Chemical probing provides insight into the native assembly state of a bacterial microcompartment2022Daniel S. Trettel, William Resager, Beatrix M. Ueberheide, Conor C. Jenkins, Wade C.WinklerUniversity of Maryland, New York University Grossman School of Health, New York University Grossman School of Medicine

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APP and DYRK1A regulate axonal and synaptic vesicle protein networks and mediate Alzheimer’s pathology in trisomy 21 neurons2022Chun-I Wu, Elizabeth A. Vinton, Richard V. Pearse II, Keunjung Heo, Aimee J. Aylward, Yi-Chen Hsieh, Yan Bi, Sopefoluwa Adeleye, Seeley Fancher, Duc M. Duong, Nicholas T. Seyfried, Thomas L. Schwarz & Tracy L. Young-PearseMolecular Psychiatry

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Nano-LC: An updated review2022Lian Shan, Barry R JonesLC-MS Biologics, QSquared Solutions

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Development of Fast Photochemical Oxidation of Proteins for in Vivo Modification in Caenorhabditis elegans2022Jessica Arlett EspinoUniversity of Maryland,

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High-throughput and high-sensitivity biomarker monitoring in body fluid by FAIMS-enhanced fast LC SureQuant™ IS targeted quantitation2022Konstantinos Kalogeropoulos, Simonas Savickas, Aleksander M. Haack, Hans Smola, Louise BundgaardNovo Nordisk Foundation,

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Protocol to characterize mitochondrial supercomplexes from mouse tissues by combining BN-PAGE and MS-based proteomics2021Roger Moreno-Justicia, Alba Gonzalez-Franquesa, Ben Stocks, Atul S. DeshmukhNovo Nordisk Foundation (NNF), Copenhagen Denmark

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Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity2022Jaione Auzmendi-Iriarte, Maddalen Otaegi-Ugartemendia, Estefania Carrasco-Garcia, Mikel Azkargorta, Antonio Diaz, Ander Saenz-Antonanzas, Joaquin Andrés Andermatten, Mikel Garcia-Puga, Idoia GarciaUniversity of the Basque Country

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Robust and high-throughput single cell proteomics with the Evosep One2022Evosep

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Comprehensive proteomics with 8.000 proteins identified with DIA-PASEF using the 30 samples per day method2022Evosep

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A semi automated AssayMAP bravo protocol for robust Evotip loading and high-throughput analysis on the Evosep One2022Evosep

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Improve and enhance your proteome coverage with the performance column for our long methods2022Evosep,

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ASMS 2022 highlights: Robust and high-throughput analysis with ultra-high sensitivity2022Dorte Bekker-Jensen, Angela Mc Ardle, Nicolai BacheEvosep

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High sensitivity limited material proteomics empowered by data- independent acquisition on linear ion traps2022Teeradon Phlairaharn, Lukas R. Woltereck, Samuel Grégoire, Benjamin Furtwängler, Erwin M. SchoofTechnical University of Denmark,

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Transcription factor-driven coordination of cell cycle exit and lineage-specification in vivo during granulocytic differentiation2022Kim Theilgaard-Mönch, Sachin Pundhir, Kristian Reckzeh, Jinyu Su, Marta Tapia, Benjamin Furtwängler, Johan Jendholm, Janus Schou Jakobsen, Marie Sigurd Hasemann, Kasper Jermiin Knudsen, Jack Bernard Cowland, Anna Fossum, Erwin SchoofUniversity of Copenhagen, Technical University of Denmark

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Using Targeted Liquid Chromatography-Tandem Mass Spectrometry to Rapidly Detect β-Lactam, Aminoglycoside, and Fluoroquinolone Resistance Mechanisms in Blood Cultures Growing E. coli or K. pneumoniae2022Dimard E. Foudraine, Lennard J. M. Dekker, Nikolaos Strepis, Stan J. Nispeling, Merel N. Raaphorst, Wendy Kloezen, Piet Colle, Annelies Verbon, Corné H. W. Klaassen, Theo M. Luider, Wil H. F. GoessensErasmus MC,

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Profiling the Plasma Apolipoproteome of Normo- and Hyperlipidemic Mice by Targeted Mass Spectrometry2022Lasse Bach Steffensen, Jannik Larsen, Didde Riisager Hansen, Thi My Linh Tha, Niels Strømvig Larsen, Hans Christian Beck, Lars Melholt Rasmussen, Martin OvergaardUniversity of Southern Denmark (SDU), Odense

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Antimicrobial resistance with the Evosep One2022Dimard Foudraine, Florence Roux DalvaiErasmus MC, Laval University

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Toxoplasma gondii ROP1 subverts murine and human innate immune restriction2022Simon Butterworth, Francesca Torelli, Eloise J. Lockyer, Jeanette Wagener, Ok-Ryul Song, Malgorzata Broncel, Matt R. G. Russell, Joanna C. Young, Moritz TreeckThe Francis Crick Institute, London.

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A fast and sensitive absolute quantification assay for the detection of sars-cov-2 peptides using parallel reaction monitoring mass spectrometry2022Akshada Gajbhiye, Atakan Nalbant, Tiaan Heunis, Frances Sidgwick, Andrew Porter, Yusri Taha, Matthias TrostNewcastle University

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ABPP-HT* – Deep meets fast for activity-based profiling of deubiquitylating enzymes using advanced DIA and DDA mass spectrometry methods2022Hannah B. L. Jones, Raphael Heilig, Simon Davis, Roman Fischer, Benedikt M. Kessler, Adán Pinto-FernandezUniversity of Oxford

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Numb exon 9 inclusion regulates Integrinβ5 surface expression and promotes breast cancer metastasis2022Yangjing Zhang, Sascha E. Dho, Kamal Othman, Craig D. Simpson, Jessica Lapierre, Andrew Bondoc & C. Jane McGladeDepartment of Medical Biophysics, University of Toronto., The Arthur and Sonia Labatt Brain Tumour Research Centre., SPARC BioCentre, The Hospital for Sick Children.

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Beta thalassemia minor is a beneficial determinant of red blood cell storage lesion2022Vassilis L. Tzounakas, Alkmini T. Anastasiadi, Davide Stefanoni, Francesca Cendali, Lorenzo Bertolone, Fabia Gamboni, Monika Dzieciatkowska, Pantelis Rousakis, Athina Vergaki, Vassilis Soulakis, Ourania E. Tsitsilonis, Konstantinos Stamoulis, Issidora S.Department of Biology, Section of Cell Biology and Biophysics, School of Science, National and Kapodistrian University of Athens., Department of Biochemistry and Molecular Genetics, University of Colorado, School of Medicine-Anschutz Medical Campus.

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High-Field Asymmetric Waveform Ion Mobility Spectrometry and Parallel Reaction Monitoring Increases Sensitivity for Clinical Biomarker Quantitation from FormalinFixed, Paraffin-Embedded Tumor Biopsies2022Steve Sweet, David Chain, Wen Yu, Philip Martin, Marlon Rebelatto, Andrew Chambers,1 Fabiola Cecchi, Yeoun Jin KimTranslational Medicine, Oncology R&D, Data Science and AI, BioPharmaceuticals R&D, AstraZeneca, Gaithersburg, MD

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The setup and optimization of a complete global proteomics two-dimensional liquid chromatography system, using Spider Fractionation2021Eris Aas BakketeigUniversity of Oslo, Oslo, Norway

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Doxycycline Alters the Porcine Renal Proteome and Degradome during Hypothermic Machine Perfusion2022Leonie van Leeuwen, Leonie H. Venema, Raphael Heilig, Henri G. D. Leuvenink, Benedikt M. KesslerUniversity of Groningen, Groningen, The Netherlands, Target Discovery Institute, University of Oxford, Oxford, UK, Chinese Academy of Medical Sciences Oxford Institute, University of Oxford, Oxford, UK

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P018 Proteomic profile of serum and urine in newly diagnosed patients with Inflammatory Bowel Disease: new approach for biomarker discovery2022Montse Baldan Martin, Mikel Azkargorta Mujika, Lorena Ortega-MorenoHospital Universitario de La Princesa, CIC bioGune, Bilbao, Spain

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Recent Developments in Clinical Plasma Proteomics—Applied to Cardiovascular Research2022Nicolai Bjødstrup Palstrøm, Rune Matthiesen, Lars Melholt Rasmussen, Hans Christian BeckOdense University Hospital, Odense, Denmark, Universidade NOVA de Lisboa, Lisbon, Portugal

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Proteomics based markers of clinical pain severity in juvenile idiopathic arthritis2022Hanne Van Der Heijden, Benoit Fatou, Kacie Hoyt, Benjamin Goodlett, Camilo Jaimes, Hanno Steen, Jaymin UpadhyayBoston Children’s Hospital MA, USA, Maastricht University, Maastricht, The Netherlands, University of Amsterdam, Amsterdam, The Netherlands, BioSAS Consulting, Inc, Wellesley, MA, USA, McLean Hospital, Harvard Medical School, MA, Belmont, USA

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Structural mechanism for the selective phosphorylation of DNA-loaded MCM double hexamers by the Dbf4-dependent kinase2021Julia F. Greiwe, Thomas C. R. Miller, Julia Locke, Fabrizio Martino, Steven Howell, Anne Schreiber, Andrea Nans, John F. X. Diffley & Alessandro CostaThe Francis Crick Institute, London, UK

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FASN-dependent de novo lipogenesis is required for brain development2022Daniel Gonzalez-Bohorquez, Isabel M. Gallego López, Baptiste N. Jaeger, Sibylle Pfammatter, Megan Bowers, Clay F. Semenkovich & Sebastian JessbergerUniversity of Zurich, Switzerland. University School of Medicine, St. Louis, US

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Hyperinflammatory environment drives dysfunctional myeloid cell effector response to bacterial challenge in COVID-192022Srikanth Mairpady Shambat, Alejandro Gómez-Mejia, Tiziano A. Schweizer, Markus Huemer, Chun-Chi Chang, Claudio Acevedo, Judith Bergada-Pijuan, Clément Vulin, Daniel A. Hofmaenner, Thomas C. Scheier, Sanne Hertegonne, Elena Parietti, Nataliya Miroshnikova,University Hospital of Zurich, University of Zurich, Switzerland

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Introducing Evotip Pure: A new generation of Evotip – It’s all in the tip2022Nicolai Bache, Dorte Bekker-JensenEvosep

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Ultra-high sensitivity proteomics on the timsTOF SCP2021Nagarjuna Nagaraj, Thomas Kosinski, Amalia Apalategui Pierre-Olivier Schmit, Markus Lubeck, Oliver Raether & Gary KruppaBruker, Germany.

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The social architecture of an in-depth cellular protein interactome2021André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau & Matthias MannMax-Planck Institute of Biochemistry, Martinsried, Germany

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Data independent acquisition enables deep and fast label-free dynamic organellar mapping2021Julia P. Schessner, Vincent Albrecht, Alexandra K. Davies, Pavel Sinitcyn & Georg H.H. BornerMax-Planck Institute of Biochemistry, Martinsried, Germany,

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Fully Automated High-Throughput Host Cell Protein Analysis of Highly Diverse Samples2021Anders Giessing

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Evotip Pure: A new generation of Evotip2022Evosep

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Unleash the power of DIA2022Patricia Skowronek, Yves Le Blanc, Ihor BatruchMax Planck Institute of Biochemistry, Sciex

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Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation2020Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B. Horning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Oliver Raether, Melvin A. Park, Sabrina Richter, David S. Fischer, Fabian J. ThMax Planck Institute of Biochemistry, Martinsried, Germany. Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark. Evosep Biosystems, Denmark. Bruker Daltonik, Germany and United States. Helmholtz Zentrum München, Germany.,

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Proteomics at the single cell level with Evosep Whisper and the timsTOF SCP2022Bruker Daltonics

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Evosep One in the clinical biochemistry lab2022Nicolai Jacob Wewer Albrechtsen, Martin OvergaardOdense University Hospital, University of Southern Denmark, NNF center for protein research, University of Copenhagen

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A beginner’s guide to Evosep2022Nicolai Bache & Ireshyn GovenderEvosep, Resyn Biosciences

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Whisper is here2021Christoph Krisp & Angela KruseBruker, Vanderbilt University

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FFPE Tissue Analysis on the Evosep One2021Bernhard Kuster & Lisa SchweizerTechnical University of Munich, Max Planck Institute of Biochemistry

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Automated sample prep workflows2021Philipp E. Geyer & Dorte Bekker-JensenOmicera Diagnostics, Evosep

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Development of a Standardized Microflow LC Gradient to Enable Sensitive and Long-Term Detection of Synthetic Anabolic-Androgenic Steroids for High-Throughput Doping Controls2021Vivian Delcourt, Patrice Garcia, Isabelle Pottier, Nasrine Mansoibou, Nicolai Bache, Yohan Glavieux, Benjamin Chabot, Isabelle Perot, Isabelle Perot, François André, Benoit Loup, Agnès Barnabé, Marie-Agnès Popot & Ludovic Bailly-ChouriberryGIE-LCH, Laboratoire Des Courses Hippiques, France. Evosep.

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Plasma extracellular vesicles in people living with HIV and type 2 diabetes are related to microbial translocation and cardiovascular risk2021Beate Vestad, Tuula A. Nyman, Malene Hove‑Skovsgaard, Maria Stensland, Hedda Hoel, Anne‑Marie Siebke Trøseid, Trude Aspelin, Hans Christian D. Aass, Maija Puhka, Johannes R. Hov, Susanne Dam Nielsen, Reidun Øvstebø & Marius TrøseidOslo University Hospital Rikshospitalet, Oslo, Norway. University of Oslo, Oslo, Norway. Norwegian Society for Extracellular Vesicles, Oslo, Norway. University Hospital of Copenhagen Rigshospitalet, Copenhagen, Denmark. Lovisenberg Diaconal Hospital, Oslo

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DebaryOmics: an integrative –omics study to understand the halophilic behaviour of Debaryomyces hansenii2021Clara Navarrete, Benjamín J. Sánchez, Simonas Savickas, José L. MartínezTechnical University of Denmark. Denmark.

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Evaluation of Disposable Trap Column nanoLC–FAIMS–MS/MS for the Proteomic Analysis of FFPE Tissue2021Stephan Eckert, Yun-Chien Chang, Florian P. Bayer, Matthew The, Peer-Hendrik Kuhn, Wilko Weichert & Bernhard KusterTechnical University of Munich, Munich, Germany., ,

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High-Throughput Drug Discovery with the Evosep One2021Casimir Bamberger & Tanveer S. BatthScripps Research Institute & Novo Nordisk Foundation Center for Protein Research

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Targeted Workflows with Evosep One2021Michael Maccoss & Vivian DelcourtUniversity of Washington & Laboratoire Des Courses Hippiques

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Plasma Proteomics with the Evosep One2021Roman Fischer & Lili NiuUniversity of Oxford & Novo Nordisk Foundation Center for Protein Research,

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Discovery Proteomics for COVID-19: Where We Are Now2021Angela McArdle, Kirstin E. Washington, Blandine Chazarin Orgel, Aleksandra Binek, Danica-Mae Manalo, Alejandro Rivas, Matthew Ayres, Rakhi Pandey, Connor Phebus, Koen Raedschelders, Justyna Fert-Bober & Jennifer E Van EykCedars-Sinai Medical Center, Los Angeles, California, United States

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AlphaTims: Indexing trapped ion mobility spectrometry – time of flight data for fast and easy accession and visualization2021Sander Willems, Eugenia Voytik, Patricia Skowronek, Maximilian T. Strauss & Matthias MannMax Planck Institute of Biochemistry, Martinsried, Germany. OmicEra Diagnostics GmbH, Planegg, Germany. University of Copenhagen, Copenhagen, Denmark,

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Deep neural network for detecting arbitrary precision peptide features through attention based segmentation2021Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan & Ming LiUniversity of Waterloo, Waterloo, Canada. Bioinformatics Solutions Inc., Waterloo, Canada.

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A deeper look at carrier proteome effects for single-cell proteomics2021Zilu Ye, Tanveer Batth, Patrick L. Rüther, Jesper V. OlsenUniversity of Copenhagen

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Time evolution of PEG-shedding and serum protein coronation determines the cell uptake kinetics and delivery of lipid nanoparticle formulated mRNA2021A. Gallud, M. J. Munson, K. Liu, A. Idström, H. M. G. Barriga, S. R. Tabaei, N. Aliakbarinodehi, M. Ojansivu, Q. Lubart, J. J. Doutch, M. N. Holme, L. Evenäs, L. Lindfors, M. M. Stevens, A. Collén, A. Sabirsh, F. Höök, E. K. Esbjörner.Chalmers University of Technology, Gothenburg, Sweden. AstraZeneca, Gothenburg, Sweden. Karolinska Institute, Stockholm, Sweden. Rutherford Appleton Laboratory, Didcot, UK. Imperial College London, UK.

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PD-L1 Overexpression, SWI/SNF Complex Deregulation, and Profound Transcriptomic Changes Characterize Cancer-Dependent Exhaustion of Persistently Activated CD4+ T Cells2021Iga Jancewicz, Joanna Szarkowska, Ryszard Konopinski, Malgorzata Stachowiak, Monika Swiatek, Katarzyna Blachnio, Szymon Kubala, Paulina Oksinska, Pawel Cwiek, Natalia Rusetska, Agnieszka Tupalska, Natalia Zeber-Lubecka, Ewa Grabowska, Bianka Swiderska,Maria Sklodowska-Curie National Research Institute of Oncology, Warsaw, Poland. Polish Academy of Sciences, 02-106 Warsaw, Poland. University Hospital Basel and University of Basel, 4001 Basel, Switzerland. Centre of Postgraduate Medical Education, 01-8

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A universal peptide matrix interactomics approach to disclose motif dependent protein binding2021Evelyn Ramberger, Lorena Suarez-Artiles, Daniel Perez-Hernandez, Mohamad Haji, Oliver Popp, Ulf Reimer, Achim Leutz, Gunnar Dittmar & Philipp MertinsMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany. Luxembourg Institute of Health, Luxembourg. JPT Peptide Technologies GmbH, Berlin, Germany. Humboldt University of Berlin, Berlin, Germany. University of Luxembourg

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Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study2021IMPACC Manuscript Writing TeamIMPACC

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AlphaPept, a modern and open framework for MS-based proteomics2021Maximilian T. Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems & Matthias MannMax Planck Institute of Biochemistry, Martinsried, Germany. University of Copenhagen, Denmark. Nvidia Corporation, Santa Clara, CA, USA. OmicEra Diagnostics GmbH, Planegg, Germany. Jena University Hospital, Jena, Germany.

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A personalized mass spectrometry-based assay to monitor M-protein in multiple myeloma patients (EasyM)2021Mariya Liyasova, Zac McDonald, Paul Taylor, Kathleen Gorospe, Xin Xu, Chenyu Yao, Qixin Liu, Liqiang Yang, Eshetu G. Atenafu, Giovanni Piza, Bin Ma, Donna Reece, Suzanne TrudelRapid Novor, Canada. University of Waterloo, Canada. Princess Margaret Cancer Centre, Canada., ,

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Exploitation of the Secretory Pathway by SARS-CoV-2 Envelope2021Guy J Pearson, Malgorzata Broncel, Ambrosius P Snijders & Jeremy G CarltonKing’s College London, UK. The Francis Crick Institute, UK.

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Mass Spectrometry Provides a Highly Sensitive Noninvasive Means of Sequencing and Tracking M-Protein in the Blood of Multiple Myeloma Patients2021Zac McDonald, Paul Taylor, Mariya Liyasova, Qixin Liu & Bin MaRapid Novor, Canada

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Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass2021Dimard E. Foudrainehttps, Nikolaos Strepisa, Corné H. W. Klaassenhttps, Merel N. Raaphorsta, Annelies Verbona, Theo M. Luiderb, Wil H. F. Goessensa & Lennard J. M.Erasmus MC University Medical Center, Rotterdam, The Netherlands

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Synthetic Antigen Presenting cells reveal the diversity and functional specialisation of extracellular vesicles composing the fourth signal of T cell immunological synapses2021Pablo F. Céspedes, Ashwin Jainarayanan, Lola Fernández-Messina, Salvatore Valvo, David G. Saliba, Audun Kvalvaag, Elke Kurz, Huw Colin-York, Marco Fritzsche, Yanchun Peng, Tao Dong, Jesús A. Siller-Farfán, Omer Dushek, Michal Maj, Erdinc Sezgin, Ben PeacoThe University of Oxford, Oxford, UK. Universidad Autónoma de Madrid, Madrid, Spain. Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain. Karolinska Institutet, Stockholm, Sweden. MediCity, Nottingham, UK.

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A blood atlas of COVID-19 defines hallmarks of disease severity and specificity2021COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium, Julian C Knight.University of Oxford

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An ultrasensitive method for analysis of viral spike N-glycoforms2021Sabyasachi Baboo, Jolene K Diedrich, Salvador Martínez-Bartolomé, Xiaoning Wang, Torben Schiffner, Bettina Groschel, William R Schief, James C Paulson & John R Yates IIIMassachusetts Institute of Technology and Harvard, Cambridge, MA, USA. The Scripps Research Institute, La Jolla, CA, USA.,

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Proteomics of resistance to Notch1 inhibition in acute lymphoblastic leukemia reveals targetable kinase signatures2021Giulia Franciosa, Jos G. A. Smits, Sonia Minuzzo, Ana Martinez-Val, Stefano Indraccolo & Jesper V. OlsenUniversity of Padova, Padova, Italy. University of Copenhagen, Denmark.,

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Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells2021YoungJun Ju, Yaacov Ben-David, Daniela Rotin & Eldad ZacksenhausUniversity Health Network, Toronto, Canada. Chinese Academic of Sciences, Guiyang, China. Guizhou Medical University, Guiyang, China. The Hospital for Sick Children, Toronto, Canada.

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A fleet of Evosep One instruments supports a proteomics factory at Rapid Novor2021Evosep. Rapid NovorEvosep. Rapid Novor

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High Sensitivity Evotips2021EvosepEvosep

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Unleashing the power of DIA combined with short gradients using Evosep One2021Florian Meier & Vadim DemchevFriedrich Shiller University, Jena, Germany. Francis Crick Institute, UK., ,

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Towards a Standardized Omics Platform with the 30 samples per day method2020EvosepEvosep

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Towards a Standardized Omics Platform with the 60 samples per day method2020EvosepEvosep

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Towards a Standardized Omics Platform with the 100 samples per day method2019EvosepEvosep

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Towards a Standardized Omics Platform with the 200 samples per day method2019EvosepEvosep

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Towards a Standardized Omics Platform with the 300 samples per day method2020EvosepEvosep

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Unleashing the true power of DIA/SWATH data acquisition with short gradients – Rapid profiling of pre-clinical models and proteome dynamics2019Evosep

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Improve and enhance your proteome coverage with the Performance column2019Evosep,

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The proteomics dilemma – High throughput analysis versus proteome depth2019Evosep, , , ,

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Evosep One: A Separation Tool Designed for Clinical Omics2019Evosep

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Co-translational assembly and localized translation of nucleoporins in nuclear pore complex biogenesis2021Ophélie Lautier, Arianna Penzo, Jérôme Rouvière, Guillaume Chevreux, Louis Collet, Isabelle Loïodice, Angela Taddei, Frédéric Devaux, Martine A. Collart & Benoit PalancadeUniversité de Paris, Paris, France. Sorbonne Université, Paris, France. University of Geneva, Geneva, Switzerland.

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Hemorrhage and saline resuscitation are associated with epigenetic and proteomic reprogramming in the rat lung2021Alexander Bonde, Trine G. Eskesen, Jacob Steinmetz, Erwin M. Schoof, Lene H.D. Blicher, Lars S. Rasmussen & Martin SillesenRigshospitalet, University of Copenhagen, Denmark. Technical University of Denmark, Lyngby, Denmark.

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Standardized workflow for precise mid- and high-throughput proteomics of blood biofluids2021Angela Mc Ardle, Aleksandra Binek, Annie Moradian, Blandine Chazarin Orgel, Alejandro Rivas, Kirstin E. Washington, Conor Phebus, Danica-Mae Manalo, James Go, Vidya Venkatraman, Casey Johnson, Qin Fu, Susan Cheng, Koen Raedschelders, Justyna-Fert Bober, SCedars-Sinai Medical Center, Los Angeles, CA, United States. University College Dublin, Dublin, Ireland.

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Malaria Parasite Schizont Egress Antigen-1 Plays an Essential Role in Nuclear Segregation during Schizogony2021Abigail J. Perrin, Claudine Bisson, Peter A. Faull, Matthew J. Renshaw, Rebecca A. Lees, Roland A. Fleck, Helen R. Saibil, Ambrosius P. Snijders, David A. Baker & Michael J. BlackmanThe Francis Crick Institute, London, UK. University of London, London, UK. King’s College London, London, UK. London School of Hygiene & Tropical Medicine, London, UK

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The COVIDome Explorer Researcher Portal2021Kelly D. Sullivan, Matthew D. Galbraith, Kohl T. Kinning, Kyle Bartsch, Nik Levinsky, Paula Araya, Keith P. Smith, Ross E. Granrath, Jessica R. Shaw, Ryan Baxter, Kimberly R. Jordan, Seth Russell, Monika Dzieciatkowska, Julie A. Reisz, Fabia Gamboni, FranUniversity of Colorado, CO, USA. University of Colorado Anschutz Medical Campus, Aurora, CO, USA. Colorado School of Public Health, Aurora, CO, USA.

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High sensitivity dia-PASEF proteomics with DIA-NN and FragPipe2021Vadim Demichev, Fengchao Yu, Guo Ci Teo, Lukasz Szyrwiel, George A. Rosenberger, Jens Decker, Stephanie Kaspar-Schoenefeld, Kathryn S. Lilley, Michael Mülleder, Alexey I. Nesvizhskii & Markus RalserThe Francis Crick Institute, London, UK. Charité – Universitätsmedizin Berlin, Germany. University of Cambridge, UK. University of Michigan, Ann Arbor, USA. Columbia University, New York, USA. Bruker Daltonics, Bremen, Germany, ,

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A robust mass spectrometer for precision medicine – the Orbitrap Exploris 240 mass spectrometer for large-scale plasma protein profiling2021Michelle L Dubuke, Sitara Chauhan, Sarah Trusiak & Emily I. ChenThermo Fisher Scientific, United States

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Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers2021Christoph H Mayr, Lukas M Simon, Gabriela Leuschner, Meshal Ansari, Janine Schniering, Philipp E Geyer, Ilias Angelidis, Maximilian Strunz, Pawandeep Singh, Nikolaus Kneidinger, Frank Reichenberger, Edith Silbernagel, Stephan Böhm, Heiko Adler, Michael LiHelmholtz Zentrum München, Munich, Germany. Ludwig‐Maximilians University (LMU) Munich, Munich, Germany. University Hospital Zurich, Zurich, Switzerland. Max Planck Institute of Biochemistry, Martinsried, Germany. Asklepios Fachkliniken Munich‐Gauting, Mu,

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Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease2021Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M Allan, Alessandra Granata, Sanjay Sinha, Tao Wang, Hugh S Markus, Alexandra Naba, Roman Fischer, Tom Van Agtmael, Karen Horsburgh & M. Zameel CaderUniversity of Oxford, UK. University of Edinburgh, UK. University of Glasgow. UK. University of Manchester, UK. Manchester Academic Health Science Centre, UK. Cambridge Biomedical Campus, Hills Road, UK. University of Illinois at Chicago, USA.

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Evotips: Quick guide2022Evosep

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Rapid, robust and reproducible host-cell protein analysis with Evosep One2021Jiao Ma & Anders GiessingAstraZeneca, Novozymes, ,

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Covid-19 research with Evosep One2021Angela McArdle & Mathias TrostCedars Sinai, Newcastle University

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A beginner’s guide to Evosep2021Nicolai Bache, Alexey Chernobrovkin & Raja NirojogiEvosep, Pelago Bioscience, University of Dundee

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Whisper is coming2021Evosep

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EVOSEP+2020Evosep

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Powerful pairing of technologies and analytical approaches2019Thomas AngelGlaxoSmithKline

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Whisper™ step-by-step guide2021Evosep

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SPIN – Species by Proteome Investigation2021Patrick L. Rüther, Immanuel M. Husic, Pernille Bangsgaard, Kristian M. Gregersen, Pernille Pantmann, Milena Carvalho, RitaM. Godinho, Lukas Friedl, Joao Cascalheira, Marie Louise S. Jørkov, Michael Benedetti, Jonathan Haws, Nuno Bicho, Frido Welker, EnricUniversity of Copenhagen, Denmark. University of Algarve, Portugal. University of Louisville, USA. University of North Carolina, USA. University of West Bohemia, Czech Republic. University of New Mexico, Albuquerque, USA. Museum Nordsjælland, Denmark. Roy, ,

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High-resolution longitudinal serum proteome trajectories in COVID-19 reveal patients-specific seroconversion2021Philipp E. Geyer, Florian M. Arend, Sophia Doll, Marie-Luise Louiset, Sebastian Virreira Winter, Johannes B. Müller-Reif, Furkan M. Torun, Michael Weigand, Peter Eichhorn, Mathias Bruegel, Maximilian T. Strauss, Lesca M. Holdt, Matthias Mann & Daniel TeupOmicEra Diagnostics GmbH, Germany. University Hospital, LMU Munich, Germany. University of Copenhagen, Denmark.

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The Host Interactome of Spike Expands the Tropism of SARS-CoV-22021Casimir Bamberger, Sandra Pankow, Salvador Martínez-Bartolomé, Jolene Diedrich, Robin Park & John Yates IIIDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA

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Molecular origin of blood-based infrared fingerprints2021Liudmila Voronina, Cristina Leonardo, Johannes B. Mueller-Reif, Philipp E. Geyer, Marinus Huber, Michael Trubetskov, Kosmas V. Kepesidis, Jürgen Behr, Matthias Mann, Ferenc Krausz & Mihaela ŽigmanDepartment of Physics, Ludwig Maximilian University of Munich, Germany. Max Planck Institute of Quantum Optics, Garching, Germany. Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry,Germany. Novo Nordisk Foundation Cent

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R1441G but not G201S Mutation Enhances LRRK2 Mediated Rab10 phosporylation in human Peripheral blood neutrophils2021Ying Fan, Raja S. Nirujogi, Alicia Garrido, Javier Ruiz Martínez, Alberto Bergareche-Yarza, Elisabet Mondragón Rezola, Ana Vinagre Aragón, Ioana Croitoru, Ana Gorostidi Pagola, Laura Paternain Markinez, Roy Alcalay, Richard A. Hickman, Jonas Duering, NeriUniversity of Dundee, UK. Hospital Clínic de Barcelona, Spain. Universitat de Barcelona, Spain. Biodonostia Health Research Institute, Spain. Columbia University Medical Center, New York, USA. The Michael J Fox Foundation for Parkinson's Research, New Yor

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Spatial-proteomics reveal in-vivo phospho-signaling dynamics at subcellular resolution2021Ana Martinez-Val, Dorte B. Bekker-Jensen, Sophia Steigerwald, Adi Mehta, Trung Tran, Krzysztof Sikorski, Estefanía Torres-Vega, Ewa Kwasniewicz, Sólveig Hlín Brynjólfsdóttir, Lisa B. Frankel, Rasmus Kjøbsted, Nicolai Krogh, Alicia Lundby, Simon Bekker-JenUniversity of Copenhagen, Denmark. Oslo University Hospital, Norway.

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Basement membrane stiffness determines metastases formation2021Raphael Reuten, Sina Zendehroud, Monica Nicolau, Lutz Fleischhauer, Anu Laitala, Stefanie Kiderlen, Denise Nikodemus, Lena Wullkopf, Sebastian Rune Nielsen, Sarah McNeilly, Carina Prein, Maria Rafaeva, Erwin M. Schoof, Benjamin Furtwängler, Bo T. Porse, HUniversity of Copenhagen, Denmark. Freie Universität Berlin, Germany. Munich University of Applied Sciences, Germany. Center for Nanoscience-CeNS, Germany. University of Glasgow, UK. Technical University of Denmark, Denmark. KU Leuven, Belgium. Queen Mary

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Crystal structure of bacterial cytotoxic necrotizing factor CNFY reveals molecular building blocks for intoxication2021Paweena Chaoprasid, Peer Lukat, Sabrina Mühlen, Thomas Heidler, Emerich‐Mihai Gazdag, Shuangshuang Dong, Wenjie Bi, Christian Rüter, Marco Kirchenwitz, Anika Steffen, Lothar Jänsch, Theresia E B Stradal, Petra Dersch & Wulf BlankenfeldtUniversity of Münster, Germany. Helmholtz Centre for Infection Research, Germany. Deutsches Zentrum für Infektionsforschung, Germany. Technische Universität Braunschweig, Germany.

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Interactions of Viral Proteins from Pathogenic and Low or Non-Pathogenic Orthohantaviruses with Human Type I Interferon Signaling2021Giulia Gallo, Grégory Caignard, Karine Badonnel, Guillaume Chevreux, Samuel Terrier, Agnieszka Szemiel, Gleyder Roman-Sosa, Florian Binder, Quan Gu, Ana Da Silva Filipe, Rainer G. Ulrich, Alain Kohl, Damien Vitour, Noël Tordo & Myriam ErmonvalInstitut Pasteur, France. Ecole Doctorale Complexité du Vivant, France. UMR 1161 Virologie, France. BREED, INRAE, Université Paris-Saclay, France. Université de Paris, France. MRC-University of Glasgow Centre for Virus Research, UK. Institute of Novel and

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Fluvastatin mitigates SARS-CoV-2 infection in human lung cells2020Francisco J. Zapatero-Belinchón, Rebecca Moeller, Lisa Lasswitz, Marco van Ham, Miriam Becker, Graham Brogden, Ebba Rosendal, Wenjie Bi, Belén Carriquí, Koushikul Islam, Annasara Lenman, Antonia P. Gunesch, Jared Kirui, Thomas Pietschmann, Anna K Överby,Medical School Hannover, Germany. Helmholtz Centre for Infection Research, Germany. University of Veterinary Medicine Hannover, Germany. Umeå University, Sweden. German Centre for Infection Research (DZIF), Germany.

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ABPP-HT – high-throughput activity-based profiling of deubiquitylating enzyme inhibitors in a cellular context2020Hannah Jones, Raphael Heilig, Roman Fischer, Benedikt M Kessler & Adan Pinto-FernandezUniversity of Oxford, United Kingdom.

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Seroconversion stages COVID19 into distinct pathophysiological states2020Matthew D. Galbraith, Kohl T. Kinning, Kelly D. Sullivan, Ryan Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P. Smith, Ross E. Granrath, Jessica Shaw, Monika Dzieciatkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. HUniversity of Colorado, United States.

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Deciphering the LRRK code: LRRK1 and LRRK2 phosphorylate distinct Rab proteins and are regulated by diverse mechanisms2020Asad U. Malik, Athanasios Karapetsas, Raja S. Nirujogi, Sebastian Mathea, Prosenjit Pal, Pawel Lis, Matthew Taylor, Elena Purlyte, Robert Gourlay, Mark Dorward, Simone Weidlich, Rachel Toth, Nicole K. Polinski, Stefan Knapp, Francesca Tonelli & Dario R AlUniversity of Dundee, United Kingdom. Johann Wolfgang Goethe University, Germany. Michael J Fox Foundation for Parkinson’s Research, United States.

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Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sites2020Raja S Nirujogi, Francesca Tonelli, Matthew Taylor, Pawel Lis, Alexander Zimprich, Esther Sammler & Dario R AlessiUniversity of Dundee, United States. Medical University of Vienna, Austria.,

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diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition2020Florian Meier, Andreas-David Brunner, Max Frank, Annie Ha, Isabell Bludau, Eugenia Voytik, Stephanie Kaspar-Schoenefeld, Markus Lubeck, Oliver Raether, Nicolai Bache, Ruedi Aebersold, Ben C. Collins, Hannes L. Röst & Matthias MannMax Planck Institute of Biochemistry, Martinsried, Germany. Bruker Daltonik, Germany. ETH Zürich, Switzerland. University of Belfast, United Kingdom. University of Toronto, Canada., ,

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High throughput proteome and phosphorpoteome sample processing coupled to fast gradient DIA2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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Peptidomic analysis of urine from youths with early type 1 diabetes reveals novel bioactivity of uromodulin peptides in vitro2019SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada

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Tech note: Evosep One: A gradient off-set focusing HPLC instrument for robust and high throughput proteomics2017

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Evosep One Field Test at the Max-Planck Institute of Biochemistry2017

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Gradient off-set focusing HPLC insturment for robust and high throughput clinical proteomics2017

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Sample loading protocol for Evotips2022

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Introducing the Evosep One – Instrument Overview2017

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Optimizing data processing parameters for samples acquired on instruments using Advanced Peak Determination2018Thermo Fisher Scientific, United States

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New Orbitrap Exploris 480 Mass Spectrometer Coupled with Evosep One2020Thermo Fisher Scientific, United States, ,

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Development of a robust and reprodusible method for detection of citrullination in complex samples2018University of Southern Denmark, Denmark

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A tale of two tails – efficient profiling of protein degraders by specific functional and target engagement readouts2020Pelago Biosciences, Sweden

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How to get Speed and Depth in yout Host Cell Protein2018Bruker Daltonics, Germany

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A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-Robust Proteomics2018Max Planck Institute of Biochemistry, Martinsried Germany and Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Online parallel accumulation – serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer2018Max Planck Institute of Biochemistry, Martinsried and Bruker Daltonics, Germany

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Robust and Reprodusible Protein Quantification in Plasma Using the Evosep One and the Agilent 6495 Triple Quadrupole LC/MS2020Agilent Technologies, United States

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High dynamic range proteome analysis with BoxCar DIA and super-resolution Orbitrap mass spectrometry2020Max Planck Institute of Biochemistry, Martinsried, Germany,

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Clinical proteomics2018Max Planck Institute of Biochemistry, Martinsried, Germany

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Development of a Novel LC Concept for Clinical Proteomics2018Max Planck Institute of Biochemistry, Martinsried and Bruker Daltonics, Germany

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Increasing proteome coverage using cysteine-specific DIA Mass spectrometry – Cys-DIA2020University of Southern Denmark

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A network of RNA-binding proteins controls translation efficiency to activate anaerobic metabolism2020SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada

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Improving proteome coverage and peptide identification rates in short LC gradients2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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High-throughput proteomics with Evosep One2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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Rapid proteome analyses using the Evosep One2018Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Targeted assay development for quantifying protein half-life over a range of mouse tissues2019Glaxo Smith Kline, Unites States

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Sensitive, Rapid, Robust and Reproducible Workflow for Host Cell Protein Profiling in Biopharmaceutical Process Development2020Glaxo Smith Kline, Unites States,

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Using Artificial Intelligence on Ultrafast LC-MSMS-DIA runs for Bacterial Identification in Urine2019CHU Québec Université Laval Research Center, Canada, ,

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Characterization of glutathione proteome in CHO cells and its relationship with productivity and cholesterol synthesis2020Technical University of Denmark

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High-throughput 4D-Proteomics – Application of dia-PASEF® and the Evosep One for short gradients2020Bruker Daltonics, Germany, , ,

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MaxQuant software for ion moiblity enhanced shotgun proteomics2020Bruker Daltonics, Germany

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Plasma proteomics goes high-throughput – timsTOF Pro with PASEF and 4D feature alignment to quantify 500 plasma proteins in 11.5 min2019Bruker Daltonics, Germany

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Fast and reproducible phosphoproteomics using MagReSyn® Amine and Tim-IMAC HP magnetic beads and the Evosep One2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Consistency, consistency – Automated Sample Prep for Translational Proteomics2020Thermo Fisher Scientific, United States

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An Ultra High-Throughput Plasma Protein Profiling (uHTPPP) Workflow Using a Modified Quadrupole-Orbitrap Mass Spectrometer2020Thermo Fisher Scientific, United States,

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Scalable and Automated Plasma Workflow Based on the Thermo Scientific Q Exactive HF-X MS Platform2019Thermo Fisher Scientific, United States, ,

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Advancing Interactomics Workflows with 4D-Proteomics on the timsTOF Pro2020Max Planck Institute of Biochemistry, Martinsried, Germany

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Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites2019Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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timsTOF Pro with PASEF and Evosep One: Maximizing throughput, robustness and analytical depth for shotgun proteomics2018Bruker Daltonics, Germany, ,

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Evidence of Structural Protein Damage and Membrane Lipid Remodeling in Red Blood Cells from COVID-19 Patients2020University of Colorado, United States

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Development of mass spectrometry-based targeted assay for direct detection of novel SARS-CoV-2 coronavirus from clinical specimens2020Mayo Clinic Rochester, United States,

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Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV2020Max Planck Institute of Biochemistry, Martinsried, Germany,

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Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level2020University of Colorado, US

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A paired liver biopsy and plasma proteomics study reveals circulating biomarkers for alcohol-related liver disease2020Max Planck Institute of Biochemistry, Martinsried, Germany and Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark

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Evosep One Enables Robust Deep Proteome Coverage Using Tandem Mass Tags While Significantly Reducing Instrument Time2019SickKids Proteomics, Analytics, Robotics, and Chemical Biology Centre, Canada,

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Increasing Throughput: From Pre-Clinical Models To Protein Complexes2019ETH Zürich, Switzerland

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In-Depth Characterization of Staurosporine Induced Proteome Thermal Stability Changes2020Pelago Biosciences, Sweden

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Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles2020University of Southern Denmark

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A Compact Quadrupole-Orbitrap Mass Spectrometer With Faims Interface Improves Proteome Coverage In Short Lc Gradients2020Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark, ,

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Covalent Protein Painting Reveals Structural Changes In The Proteome In Alzheimer Disease2020Scripps Research Institute, United States

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Advanced Host Cell Protein (Hcp) Analysis With Tims Qtof Ms Powers Biopharmaceutical Development 2019Bruker Daltonics, Germany

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Accurate Detection Of The Four Most Prevalent Carbapenemases In E. Coli And K. Pneumoniae By High-Resolution Mass Spectrometry2019Erasmus MC, The Netherlands

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Study: Increased De Novo Protein Sequencing Coverage With Optimal Protease Cocktail2019Rapid Novor, Canada

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High-Throughput Proteomics Quantification Enabled by Fast LC Separation and Advanced PRM Acquisition2018Thermo Fisher Scientific, United States, ,

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Fast Confirmatory Analysis of Rhuepos in Plasma for Horseracing Doping Control2019Le Laboratoire des Courses Hippiques (LCH), France

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